Cannabis sativa (hemp): 115697534
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Entry
115697534 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115697534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115697534
03009 Ribosome biogenesis [BR:
csav03009
]
115697534
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115697534
Spliceosome [BR:
csav03041
]
Complex A
U1 snRNP components
U1 related factors
115697534
Complex B
115697534
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Helicases
115697534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
115697534
NCBI-ProteinID:
XP_030480445
LinkDB
All DBs
Position
7:68866556..68872085
Genome browser
AA seq
1127 aa
AA seq
DB search
MATAEPASVSTGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPASAAPPLP
AGPPPTAAPTPKLAPIPVAHSVSQQNNGLSQYGQQMMQGTQQQPQQGNQHGHLMPQQQHG
QVQQHGQMMQHPSQQMQHQMYQQIPQTSGHQMSQPMGQQPPQSQGSQMAGPPQTQQYPHQ
PPLQYMGYNQQGIPPQGHQSTQQQQTQHGPQVQTFANQQEYNSGYSKREEDDFQNRNQIG
FSPSQFQQPSGSGAQNFPSGANSTQMLQMGPHSGQAQQFGGTLHNMQQPAAMGQLQPGGT
DSVYNPHGSRLQNERDPSAMHGPQANMPPVGLRMGHENNMQGRGGNDYVFSGNKEPPNVG
PQQPKLASIPGPRFQQDMRNSGAPYPNVAPNQVPPINNGAGHPMHNHATGGPPLPSNATM
KPPFFGNTEVTNFSPAEIYRQQHEVTASGDNVPAPFATFEATGFPPEILRDIYSAGFSTP
TPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLMPAFMLLRQRHNNAQNGPTVLVLAPTRE
LATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKKID
FGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPV
QVNIGRVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKIIVFCSTKRLCDQLAR
TIGRNFGAAAIHGDKSQGERDWVLSQFKSGKSPILVATDVAARGLDIKDIRVVVNYDFPT
GVEDYVHRIGRTGRAGATGMAYTFFSEHDWKYAADLIKVLEGANQHVPPEVREIAMRGGP
GFGKDRRFDSGGGGRGGMRDGGGFGGRGGGMRDGNFGNNHGGMRDSGFGGRGGPRDGPMS
GFGGRGDFFGGRGNRGRGFGSPGGGGNVGFGRNERGGNDRYNNMDVRGRGGRGRGRFDNR
RDVAAGGRSSRGRSYSRSPERVRTWGYSRSPSRSRSRSYSRSRSRSYSRSRSRSRSRSRG
RGRSKSRSPRRSRSRSRSRNRGHSPSYDKYENTRERPSDQKDPAPPVADLTTPTETKTSS
MSPGTQGTAFPEETEAEKNTEPEKPTVGENPEPQEVQQPQPSPSIDH
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcagagcctgcatcggtttctactggtccgcgatatgcacccgatgatcct
acacttccgaaaccttggaagggtttgatagatggaagtacaggtttactttactactgg
aaccctgaaactaatgtaactcaatatgagaaacctgctagcgcagctccaccattgcca
gctgggccaccaccgacggcagctcctacgcctaagttggctccaattccggtggctcat
tcggtttcgcagcagaataatggcttatctcagtatgggcagcaaatgatgcaaggaact
cagcaacagccgcagcaagggaaccaacatggacatttaatgccacaacaacagcatggt
caagtgcaacaacatgggcaaatgatgcagcatccgtctcaacaaatgcagcatcaaatg
tatcagcagattccccaaacttcaggccatcaaatgtcccagccaatggggcaacaacca
ccacagagtcaaggctcccaaatggctggaccaccacaaacacagcaatatccacatcag
ccaccgttgcagtatatgggttataatcaacaaggcatccctcctcaagggcaccagagt
acgcagcagcaacaaactcagcatggccctcaagtgcagacatttgcaaatcaacaagag
tataactcaggatactcaaaaagggaagaagatgattttcaaaacagaaatcaaattggg
ttttccccttcccagtttcagcaaccaagtggctcaggtgctcagaattttccttcagga
gctaattcaactcagatgctacagatgggtcctcattcaggtcaggctcaacagtttggt
ggcactttgcacaatatgcaacaacctgctgcaatgggtcagttgcagccaggtggtact
gattcggtttataacccacatggcagtaggctacagaatgagagagacccatcagcaatg
catggtccgcaggctaatatgcctcctgttggattaagaatggggcatgagaacaatatg
cagggtagaggtggaaacgactacgtgtttagtggtaacaaggaaccaccaaatgttgga
cctcagcaacccaagcttgcttccattccagggcccagatttcagcaggacatgaggaac
agcggagctccatatccaaatgttgctccaaaccaggttcctcccattaataatggggca
ggacatccgatgcataatcatgcaacaggtggtccaccattgccaagtaatgctacgatg
aagcctcctttctttggaaatactgaagttacgaacttttcgcccgcagaaatttatcgt
cagcaacatgaagttactgcatcgggagacaatgttcctgcaccatttgcaacatttgag
gctactggctttcctccggagatattgagagatatttattctgcgggattttcgactccc
accccaattcaggcacaaacatggccaatcgctcttcaaagcagggacattgttgcaatt
gctaaaactggttctggaaaaacattgggatatttaatgcctgcttttatgcttctgaga
caacggcataacaatgcccaaaatggcccgacagtgttggttctggctccaacacgggag
cttgcaacacaaatacaggatgaggtcatcaaatttggtcgatcctcaagagtttcttgc
acgtgcctatatggtggagctcccaagggtcctcagctaaaggaattagatcgtggtgca
gatatagtcgttgcaactcctggtcgtcttaatgatatactggaaatgaagaagattgat
tttgggcagatctcacttcttgtgcttgacgaggccgatcgaatgcttgacatgggtttt
gaacctcaaattcgaaaaattgtaaatgaaattcccccacgcagacaaactctcatgtac
acagcaacatggcctaaagaagtaagaaaaatagcgggtgatcttcttgtcaatcctgtc
caggttaacataggacgtgttgatgagctcgctgcaaacaaagctatcacacagtatgtg
gaagttgtgccacaaatggagaaacaacgacgtttagagcaaatccttagatctcaggaa
cgaggttctaagattattgttttctgttcaacaaagaggttgtgtgatcagcttgctcgt
actattggacgaaatttcggtgctgctgcaattcatggagacaagtctcaaggtgagaga
gactgggttttaagtcagttcaagagtggaaaatcaccaatattagtggccacagatgtt
gctgccagggggcttgacatcaaggatataagggtggttgttaactatgatttcccaact
ggggttgaggactatgttcaccgcattggaagaaccgggagagccggcgcaactggaatg
gcttacacttttttctccgagcatgactggaaatatgcagcagatttgattaaagttctg
gagggagctaaccaacacgtacccccagaagtgagggagatcgccatgcgcggtgggcct
ggctttggcaaagacaggcgttttgattctggtggaggtggtcgtggtggcatgagagat
ggtggtggctttggaggtcgtggaggaggcatgagggatggcaacttcggtaataaccat
ggtggtatgagggatagtggtttcggtggccgtggtggccctagagatggccctatgagc
ggctttgggggtaggggtgatttctttggtggccgtggcaataggggacggggatttgga
agcccgggcggtggtggtaatgttggttttggtaggaatgaacgtggtgggaacgatcga
tacaataatatggatgtgcgaggacgtggtggccgtggacgaggacggttcgataataga
agagatgttgctgctggtggtaggagcagcagaggcagaagttacagccgtagccccgaa
agagttagaacatggggttatagcagaagcccaagccgtagccgcagtcgcagttatagc
aggagtagaagtagaagctacagcagaagccgcagtcgtagcagaagccgatctcgcggc
cgtggtcgaagtaagagccgcagcccaagacgaagcagaagccgaagccgcagccgtaat
cgtggccatagcccaagctacgacaaatacgaaaatactcgggaacgtccctccgatcaa
aaggatcccgcacctccagtggcggacctcacgactcctaccgagacaaaaacttcatct
atgtctcctggtacacaaggcactgcatttccagaagaaaccgaggccgagaagaatacc
gagccggagaagccaacggtaggagaaaacccggaaccacaagaggtacaacaaccacaa
ccatccccatcaattgatcactaa
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