Cannabis sativa (hemp): 115697999
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Entry
115697999 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X3
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
csav03015
mRNA surveillance pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115697999
09122 Translation
03013 Nucleocytoplasmic transport
115697999
03015 mRNA surveillance pathway
115697999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115697999
03041 Spliceosome [BR:
csav03041
]
115697999
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115697999
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115697999
Spliceosome [BR:
csav03041
]
Complex C
Other components
EJC/TREX
115697999
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115697999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
115697999
NCBI-ProteinID:
XP_030481047
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All DBs
Position
X:complement(71371180..71377031)
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AA seq
388 aa
AA seq
DB search
MVSFSLSIRKDRWHYVLLTNGSFNLAFFGSSSVQHECIPQAILGMDVICQAKSGMGKTAV
FVLSSLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHK
DLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT
PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKL
NDLLDALDFNQVVIFVKSVSRAAELNKLLAECNFPSICIHSGMSQEERLKRYKGFKEGQN
RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSD
VLNDVQERFEVDIKELPEQIDTSTYMPS
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggttagctttagcctttcaataagaaaagatcggtggcattatgttttacttaccaat
ggttctttcaacctggctttctttggttcttcatcagtgcaacatgaatgtatccctcaa
gctattctaggtatggatgttatatgtcaagctaaatctggaatgggaaaaactgctgtt
tttgttctgtcaagtctgcagcagattgatcccgtggctggccaagtttctgcccttgtt
ctctgtcatacaagagagttggcttatcagatatgtcatgagtttgagaggtttagtacc
tacttgcctgatctcaaggttgcggtcttttacggaggtgtcaacatcaaactccacaaa
gatctactgaaaaatgagtgcccccatattgttgttggaactcctggaagaatattagca
ctgaccagagataaagatctttccctgaagaatgtgaggcattttattctagatgaatgt
gacaagatgcttgaatcacttgatatgaggagagatgtgcaagagattttcaagatgaca
cctcatgataagcaagtcatgatgttttctgcaacacttagcaaagaaatccgccctgtt
tgcaagaaatttatgcaagatcctatggaaatctacgttgatgacgaggccaagttaacc
ctacatgggcttgtacagcactacatcaagttgagcgagtcggagaaaaaccgcaagttg
aacgacctccttgatgctttggatttcaatcaagttgttatttttgttaaaagtgtgagc
agagctgctgagctgaacaagttgcttgcagagtgcaactttccttctatatgtatccat
tcaggcatgtcccaggaggaaaggttgaagcgctataaaggtttcaaggaggggcagaat
aggattctcgtggctacagatttggttggtagaggaattgacattgagcgtgttaacatt
gtcattaactatgacatgcctgattctgccgacacctatctacacagggttggtagagct
ggtagattcggcacgaaagggcttgccatcacatttgtttcttctgctgctgattctgat
gttctcaatgatgttcaggagaggtttgaggtggatataaaggagcttccagagcagatt
gatacttctacatacatgccatcgtaa
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