Cannabis sativa (hemp): 115698037
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Entry
115698037 CDS
T08987
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115698037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115698037
03009 Ribosome biogenesis [BR:
csav03009
]
115698037
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115698037
Spliceosome [BR:
csav03041
]
Complex A
U2 snRNP components
U2 related factors
115698037
Complex B
115698037
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115698037
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
90S particles
Helicases
115698037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
T2SSE
AAA_7
FtsK_SpoIIIE
ABC_tran
AAA_30
AAA_33
TsaE
PhoH
NACHT
Motif
Other DBs
NCBI-GeneID:
115698037
NCBI-ProteinID:
XP_030481085
LinkDB
All DBs
Position
X:complement(92378798..92382958)
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKITKSNGGLMSNNAGNSLINMWNGKPYSQRYFDILEKR
KTLPVWQQKEEFLQVLKANQTLILVGETGSGKTTQIPQFVLEAVDIETPDKRRKMMIACT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYQTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKE
VANLGDQVGPVKAVPLYSTLPPAMQQKIFDPAPPPLNEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQNVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCYRLYTERSFN
DDLQPQTYPEILRSNLANIVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
EGNLTKLGQIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFVNARALKSADNVRQQLVRIMARY
NLKLCSTDFSSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYFDLENFPQCEAKRVLERLYKKREREK
EESRNRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagtttgtttgacgtggtggatgagacctctgtc
tcagcgaagatcacgaaatcgaacggtggtctgatgagtaataacgccgggaatagtctg
ataaatatgtggaacggcaagccctactcgcagaggtactttgatatacttgagaagagg
aagaccttgcctgtctggcagcagaaagaagagttcttgcaggtattgaaggctaatcag
actttgattttggttggtgagactggtagtggtaaaacaacccagatcccgcaatttgtt
ttggaagctgttgatattgaaactccagataaaagaagaaaaatgatgattgcatgcacc
cagcctcgtagagtggctgccatgtctgtttctcgacgtgttgctgaagagatggacgta
accattggagaagaagttggttatagcattcgttttgaggactgcagcagtgcaaagaca
gttttgaagtatcaaactgatggtatgcttttaagagaagcaatgaccgatccactattg
gagcgctacaaggtgataattcttgatgaggctcatgagagaactttggcaacagatgtt
ctttttggactgctaaaggaagtattgagaaatagacctgacctgaagctggttgtgatg
agtgcaactcttgaggctgaaaagtttcagggttattttagtggtgcacctcttatgaag
gttcctggtaggcttcaccctgtggaaatattttacacccaagaaccagaaagggactac
ctggaggctgcaattcggacagttgtccaaatacatatgtgtgagcctcctggtgatatt
cttgtatttcttactggagaggaggagatagaagatgcatgtcgtaaaataaacaaggaa
gttgcaaatcttggggatcaggtgggtcctgtgaaagcagttcctctgtattcaactctt
cctccagctatgcagcagaagatatttgaccctgctcctcctccactgaatgagggaggc
ccacctggaaggaagattgtagtatcaactaacattgctgaaacttctttgactatagac
gggatagtttatgttatcgaccctgggtttgccaaacaaaacgtttataatccaagagta
agagttgagtccttgttggtttctcccatatcaaaggccagtgcacatcaaagatcaggg
cgtgctggtagaacccaaccaggaaaatgttatagactttacacagagaggagttttaat
gatgatcttcagccacagacctatcctgaaatattgaggtcaaatctagcaaatatagta
ctgactttgaagaaattgggaatagatgatctggttcactttgactttatggacccccct
gctccagagacattaatgcgagcactagaggtgttgaattatttgggagcgttggacgat
gaaggaaacttgacaaagctggggcaaattatgagtgagtttccactagatcctcagatg
tccaagatgctggttgttagccctgaattcaactgttcaaatgagattctatccatttct
gccatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagctgcggat
gaggcaaaagctaggtttggccacattgatggagatcacctcacacttctgaacgtgtat
catgcctacaagcaaaataatgaggatcagtcttggtgctacgaaaattttgtcaacgct
agggcgcttaaatctgctgacaatgtcaggcaacagctagtccgcatcatggcacgatac
aacctcaagctatgcagtactgatttcagcagccgtgactactacattaacataagaaaa
gcaatgctagctggatatttcatgcaggtggctcatctggaacgcactggacactattta
accgtgaaagacaaccaggttgtgcatttgcatccttcaaattgccttgaccacaaacca
gagtgggtcatctacaatgagtatgtgttaacaagcaggaattttatacgtacagtgaca
gatgttcgcggcgagtggttagttgatatagcaccgcactattttgatctggagaacttt
cctcagtgtgaggccaagagagttcttgagaggctttacaagaagcgtgaaagggagaag
gaggagagtagaaacagaaagtga
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