Cannabis sativa (hemp): 115698245
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Entry
115698245 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115698245 isoform X1
KO
K06100
symplekin
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115698245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115698245
03019 Messenger RNA biogenesis [BR:
csav03019
]
115698245
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115698245
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115698245
U7-dependent histone pre-mRNA processing factors
115698245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
HEAT_2
Hid1
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
115698245
NCBI-ProteinID:
XP_030481305
UniProt:
A0A803QFS5
LinkDB
All DBs
Position
7:complement(5549298..5560427)
Genome browser
AA seq
1390 aa
AA seq
DB search
MVGMVMVAANSMEKLSGLVDSAKLATDIPSKLDRLRQLKNGLVEDDLDLLSHLLPRLFEL
HSDRFSPVRKFAIQLIGEIGLKHVDFLSEIVPVLLTVLNDPTPAVARQAVTCGIDLFRRT
LEKVAIQGLYSSELDDSLESAWEWVLKLKEKIFSIAFRHGGGGIRLLALKFVETVILLYT
PDPNGSLEPPSDEVNLMEFNISWLRGGHPVLNVGDLSIEASQSLGLLLDKIRLPSGNSLS
NSTLIVLINSLSTIATKRPAFYGRILPVLLGLKPTSSKVNGVHIFGVHHALKNAFITCLK
CTYPGAAPWRDRLARALREMKVGGSAEPVLHRVSEINGGLGTEQEDTPLAKEEKPIVRPY
DSVHNNLGKKRSGAQGKGNCAKDEDSSGKRIRVTPSASAESAKEFDKNNNGVQDDISSTG
PTTSKGESDTGPVHQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMLNMRNLPPS
HSINEVDDEPLLNMSIIGSDSQVKYPPSFVANVLSLSSTFPPIASLLDTHQAVSDDMMQP
EEEEECLADNAVVDGAESPLYSTGLSAPDVSSELGKGCLAIPSDINDLGNLENEIPGLDS
VAHNDGLSGHLAASSLISTDLEDASLDQITSCSQILPPNVLPSVSTDRSEELSPKAIVSD
VNSLVSSTATSVGLSHHFVLPKMSAPVISLADDEKDDMQKSALNRIVEAYKQLSVAGDLQ
IRSSLLASLGIEFPSELEPWKLIQKHILADYVNHEGHELTLRVLYRLFGEAEEDRDFVSS
TTATSVYEMFLFTVVETLRDSFPPSDKSLSRLLGDVPYLPNTVLKLLECLCSPEILDKTE
KEIQSGDRVTQGLSTVWSLILLRPPFRDACLKIALKSAVHHLEEVRMKAIRLVANKLYPV
SSIAQSIEDFAREMLLSVINSDSSDKLDAEGPITERRKDPDPERPLNELQSMSTNSKDMP
SDTHQSSTSQGASSLMVSEAQRCMSLYFALCTKKHSLFGQIFVVYRSASAAVKQAVDRHI
PILVRTMGPSPALLEIISDPPVGSENLLVQVLHTLTDGAVPSQELINTIKKLYNSKLKDI
EILIPILPFLSKDEVLLNFSRVVKLPPEKFQTALIRILQGSPHSGPLLAPAEVLIAIHGI
DPERDGIPLKKVTDACNACFEQRQTFTQQVLAKVLNQLVEQIPLPVLFMRTVLQAIGAFP
ALVDFVMEILSRLVSKQIWKYPKLWVGFLKCAFLTKPQSFGVLLQLPPPQLENALNRTPA
LRAPLAAHASQMDIRSSLPRSILVVLGIASDTQTSAQAQTSQLQAQTSQSQAQTCQSQTQ
TSQAQAQTSQSQAQTCQSQTQTSQSQAQTSQSQAQTSQSQAQTSQSQAAETSTADKEGIK
EKAKESSSAS
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatggtgatggtagcggcgaactccatggaaaagctttcgggtcttgtggac
tcggccaagttggccacagacattccatcgaagctcgatcgcctccgacaattgaagaat
ggcttggttgaagatgatcttgatttgctctctcaccttcttcctcgtcttttcgaactt
cattctgataggttcagtccggttcgcaaattcgctattcagttaattggcgaaattgga
ctgaagcatgtcgatttcttatctgaaatcgttcctgtattgttaactgttctgaatgat
cctacaccagctgttgctcgacaagctgtcacttgtggaattgatttgtttcgtcgaact
cttgaaaaagttgcaattcagggtctatattctagtgaattggatgattcactagagtcg
gcatgggagtgggtgttgaagctcaaggagaaaatattttcaatagcttttcggcatggt
ggtggaggaataagattgctagcattgaagtttgtggagacagtcattcttctttacaca
cctgaccctaatggctctttagagcctccatctgacgaagtaaacctaatggaattcaat
atatcttggcttcgtggaggtcatcccgtactcaatgttggggatttatcaattgaggcc
agtcaaagtttgggattactgcttgataaaatcaggctcccttctgggaattccctcagt
aactcgacacttattgtgcttattaatagtctttcaacaattgcaacgaagaggcctgca
ttctatggacgcatccttccagttctacttggtttgaagcctacaagctcaaaagttaat
ggagtgcatatatttggggtacatcatgctttgaaaaatgcattcatcacctgcttgaag
tgtacatacccgggtgctgcaccgtggcgtgatcgtttagcaagggccttgagggagatg
aaagttggaggatcagcagagcctgtccttcaccgtgtttctgagattaatgggggtctg
ggaacagagcaagaagatactccccttgcaaaggaagagaaacctattgttagaccatat
gactccgtgcacaacaatcttggaaagaaaaggtcaggagcacagggtaaaggtaattgt
gctaaggatgaggattcatcagggaaacgaatccgagtaacacctagtgcctcggctgaa
tcagctaaagagtttgataagaataataatggtgttcaggatgacatttcgtcaactgga
ccaaccacttctaaaggagagagtgatactggtcctgtgcatcaacttgtcgccatgttt
ggtgccttggttgctcaaggggaaaaagcagtaggttctttagagatactcatttcaagc
atctctgctgatctgctggctgaggtagtgatgctcaatatgcgcaatcttcctccaagt
cattctataaacgaagtggatgatgaaccactgctgaacatgagtataattggcagcgat
tctcaagttaaatatccaccatcatttgttgctaatgttctttcactttccagtactttc
ccaccaatagcttcactgctagacactcatcaggcagtatccgatgatatgatgcaacct
gaagaggaggaagaatgtttagccgataatgctgttgttgatggtgctgaatctccattg
tattctactgggttatctgctcctgatgtttcttctgaattgggcaaaggttgcctagca
attccatctgatattaatgatttggggaatctagagaatgaaatacctggattggattct
gttgctcataatgatggcctgtccggacatctagctgcttcgtcattgatctccactgac
ttagaagatgccagtttagatcaaatcactagctgtagtcaaatattgccaccgaatgta
cttccatctgtgtcaacagataggtctgaagagctaagcccgaaagcaattgtttcagat
gtcaacagcctggtttcttcaacagcaacttcagttgggttatctcatcattttgtcttg
ccaaaaatgtcagctcctgttatcagccttgctgatgacgagaaagatgatatgcagaaa
tcagccctcaatcgtattgttgaggcttataagcaattatcagttgcgggagatttacaa
attcgatcttcgttgcttgcaagcttgggaattgagtttccctctgagttagaaccctgg
aagctgatacagaagcatattttggcagattatgtaaatcacgagggacacgagttgaca
ctgcgtgtcctgtacaggttatttggtgaagcagaagaggaccgtgactttgtatcgtct
acaactgctacttctgtatacgaaatgttcctttttactgtggtcgaaacacttagagat
tcatttccaccctctgacaaatcattaagcagattgcttggtgatgttccgtatttacca
aatacagttttaaagttattggagtgcttgtgttcgccagaaatcttggacaagactgaa
aaagaaattcaaagtggtgatcgagtgactcaaggcttgagcacagtatggagcttgatt
ttactaaggccccctttcagagatgcctgcttgaaaattgctttaaagagtgcagttcat
catctggaggaagttcgtatgaaggctattcgactggtagccaacaagctttatcctgtg
tcatccattgctcaaagcatagaagattttgctagagaaatgctgctttctgtaataaat
agtgattcctcagataaattggatgctgaaggaccaattactgaacgcagaaaggatcct
gatccagaaaggcctttaaatgaacttcaatcaatgagtaccaacagtaaagatatgccc
tctgatactcatcaatcctccacttcccaaggtgcttcatctcttatggtctctgaagcc
caacggtgtatgtcactatattttgctttgtgtacaaagaaacattccctcttcgggcaa
atttttgttgtttatagaagtgcatctgcggcagttaagcaggcagttgatcgtcatatt
ccaatactagtccgcactatgggcccatcaccagcacttctagaaattatttcggatcct
cccgttggaagcgagaaccttttagtgcaggttttgcatactctgacagatggagcagtt
ccttctcaagaattgataaatacaattaagaagctatataattcaaaactaaaggatata
gagattcttattccaatattaccctttctttctaaagatgaggttttgctcaacttttcc
cgagttgtgaaacttccaccagaaaagtttcaaacagctctcattcgcatactacagggc
tcaccacattctggtccactgcttgctcctgctgaggtcttaattgctatacacgggatt
gatcctgaaagagatgggatccctctgaagaaggtcacagatgcttgcaacgcttgtttc
gagcaacgacaaacattcacccaacaagttcttgccaaagtgttgaatcaattggttgag
cagattcctcttcctgtcttgttcatgcgtacagtgttacaagccataggggcttttcct
gcactggtagattttgttatggagatcctatctcgacttgtaagcaaacagatttggaaa
taccccaagctgtgggtgggtttcttgaagtgtgcattcttgacgaaacctcagtctttt
ggtgtgttgcttcagctacctccaccacaacttgaaaatgcattgaatcggaccccggct
ttgagagccccattggctgcacatgctagtcaaatggatattcgatcatcacttccgagg
tctatattggtagttttgggcatagcttctgatactcagacttcagcacaggctcaaaca
agtcaattacaggcacaaacaagtcagtcacaagcacaaacatgtcagtcacagactcaa
actagtcaagcacaggcacaaacaagtcagtcacaagcacaaacatgtcagtcacagact
caaactagtcagtcacaggcgcaaactagtcagtcgcaggcgcaaacaagtcagtcgcag
gcacaaacaagtcagtcgcaggctgcagaaacgagcactgcagataaggagggtatcaaa
gagaaagctaaagaatcatctagtgcttcttaa
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