Cannabis sativa (hemp): 115698518
Help
Entry
115698518 CDS
T08987
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115698518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115698518
Enzymes [BR:
csav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
115698518
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115698518
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
DUF1611
ATP_bind_1
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
115698518
NCBI-ProteinID:
XP_030481461
LinkDB
All DBs
Position
8
Genome browser
AA seq
445 aa
AA seq
DB search
MAYGGTPLGPPPMAAAAASSSASTVRQVKLDRESELRIEVGYDSSLRLRLLNGTAEIFGT
ELPPEIWLTFPPRLKFAVFTWYGATIELDGSTETDYTADETPMISYVNVHAILDGRRNRA
KASSSDGSSTVQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITLPG
CIAATPIEMPIDPVEGIPLEMPLVYFYGHTTPSNNVELYKILVRELSQLLERQFAGNIES
RAAGMVINTMGWIEGIGYELLLHAIDTFNINVVLVLGQEKLCSMLRDVLKNKPDVDVVKL
QRSGGVVSRNVKYRQKARSLRIREYFYGRINDLSPHSNIASFSDLLVYRIGGGPQAPRSA
LPIGAEPAADPTRLVPVNINQDLLHLVLAVSFAKEPEEILSSNVAGFIYITDIDIQRKKI
TYLAPAAGDLPSKYLIVGTLTWIET
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggtacaccactgggtcccccaccaatggcagctgctgctgcttcatca
tcagcctccacagttcgccaggtcaagttggaccgagagagcgagcttcgaatcgaagtt
ggatacgactcctccctcaggctccgacttctaaacggcacagctgagatattcggcacc
gaactcccacctgaaatctggctcactttccctcccaggctcaaatttgctgttttcact
tggtatggagccacaattgaactggatggtagtactgaaactgactacactgcagatgag
acccctatgattagctacgtgaatgtccatgccatattggatggtcgaagaaaccgtgct
aaagcttcgtcctctgatggttccagtacggttcaggggcctcgggtcattgttgtggga
cctacagattctgggaagagtacattgtcaagaatgcttcttagttgggcagctaaacag
ggttggaaacctacttttgtggacttggatattggtcaaggatccataactctaccggga
tgtattgctgctactcctattgaaatgcctattgacccagttgaagggattcctcttgag
atgcctttggtttacttctatggacacaccactcccagtaacaatgtagaactatacaaa
atccttgtgagggagctttctcaactgcttgagagacaatttgcgggtaatattgaatct
cgagctgctggcatggtgatcaataccatgggttggatagaaggaataggatatgagttg
cttcttcatgcaatcgacacatttaatatcaacgttgtattggttctgggtcaggaaaaa
ctttgcagtatgctcagagatgttctgaaaaacaagcctgatgtggatgttgtaaaactt
caaagatctggaggagttgtatcgaggaatgtcaaatatcgtcagaaggctaggagtttg
aggataagggaatatttttatggaaggataaacgatctctccccgcattctaatattgcg
agttttagtgatttattggtctatcgaattggtgggggacctcaggcaccccggtcagcc
ctgccaattggtgcagagcctgcagcagatcctacaagattagtccctgtgaatatcaac
caggatttgctccatctagttcttgctgtttcatttgcgaaagagcctgaggaaattctt
tcaagcaacgttgccgggtttatatacattactgacattgacattcagaggaagaagatt
acatatcttgcaccagctgctggtgatctcccgagcaaatatctgattgtgggaaccttg
acatggatcgaaacatag
DBGET
integrated database retrieval system
