Cannabis sativa (hemp): 115699122
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Entry
115699122 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115699122
KO
K12816
pre-mRNA-processing factor 17
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115699122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115699122
Spliceosome [BR:
csav03041
]
Complex C
Other components
Step II factors
115699122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_WDR75_2nd
Beta-prop_SCAP
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
115699122
NCBI-ProteinID:
XP_030482226
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All DBs
Position
8:complement(33455389..33458965)
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AA seq
592 aa
AA seq
DB search
MDLLRNYQDQNDDEMDDPEPQNPTTSNPSSPDASPPRLLTSKSAAPKVDDTMLALTVSGT
NGHKALSKPIDPTQHAVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVEDASIE
PFVFDEQYNTFHKYGYAADPSAAAGYNYVGDFDALQKNDAISVYNIPQHEQKKRKLEKKK
ESTENEDEEEAGVDVSEVENPSTDAWLMKNRKSPWAGKKEGLPTELTEEQKKYAEEYAKK
KGEEKSGADKGEVVADKTTFHGKEEKDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGH
TKGVSAIRFFPKYGHLILSAGMDTKIKIWDVFNTGKCMRTYMGHAKAVRDICFSNDGTKF
LSAGYDKNIKYWDTETGQVISTFSTGKVPYVVRLNPDEDKQNILLAGMSDKKIVQWDMNT
GQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI
SLHPNSNWLAAQSMDNQILIYSTREKFQLNKKKRFAGHVVAGYACQVNFSPDGRFVMSGD
GEGKCWFWDWKTCKVFRTLKCHEGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggatctccttcgaaactaccaggaccaaaacgacgacgaaatggacgatccggagcct
caaaaccctactacctccaatccatcgtcccctgacgcttccccacctcgcctcctcacc
tccaagtccgccgcccccaaggtcgacgacaccatgcttgctctcactgtcagtggcacc
aatggccacaaggctctctccaaacctatcgatcccactcagcacgctgtcgccttcaat
cccacttacgatcagctctgggctcccatttatggcccatctcacccttacgccaaggac
ggtatcgctcaaggtatgcgaaatcacaagcttggctttgtcgaggacgcttctattgag
ccctttgtgttcgacgaacagtacaatactttccacaagtatggctacgccgccgaccca
tctgctgctgctgggtacaattacgttggagattttgatgcccttcagaagaacgacgcc
atttctgtatacaacattccgcaacacgagcagaagaagagaaagctggagaagaagaag
gaatctactgagaatgaggatgaagaggaggctggtgttgacgtgagtgaagttgaaaac
ccttcgactgatgcttggttgatgaagaacaggaagagtccttgggctggtaagaaggag
ggtctgcctactgagttaacggaagagcagaagaaatacgccgaagaatatgcgaagaag
aaaggggaggagaaatctggtgctgataaaggagaggttgttgctgataagaccactttc
catggaaaggaagaaaaggattatcagggtcggtcttggatcgcgcctccaaaggatgcg
aaggccacaaacgatcattgttatataccaaagaggttagttcatacatggagtggacat
accaagggtgtttctgctatacgattcttccccaaatatggccatttgattctgtctgct
gggatggatacaaagataaagatttgggatgtttttaatactggtaagtgtatgagaact
tatatgggccatgccaaagccgttcgtgatatttgtttttcaaatgatgggactaagttt
ttgagtgccggttatgataagaatatcaagtactgggacacggaaacagggcaagtcata
tcaacattctcaactgggaaggttccttatgttgttaggcttaatcctgatgaagataag
cagaatattttattagctgggatgagtgataagaagattgttcagtgggatatgaatact
ggacagattactcaagagtatgatcagcatttaggagctgtgaataccattacatttgtt
gataataatcggagatttgtcacttccagcgatgacaaatcgcttcgtgtttgggagttt
ggcattcctgttgttatcaaatatattagcgaaccgcatatgcactcaatgccctcaata
tcacttcacccgaactcaaattggcttgctgcgcagagtatggacaatcagattcttatt
tacagcaccagagagaagtttcagcttaataagaaaaagaggttcgcggggcacgtggtt
gctggttatgcttgccaagtcaatttctcacctgatgggcgctttgtcatgtcgggagat
ggggaggggaaatgctggttctgggactggaagacttgcaaagtgttcagaactctcaag
tgtcatgagggtgtatgcattggagctgagtggcatccgttggagcaaagtaaagtagca
acatgtggctgggatggattgatcaagtactgggactag
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