Cannabis sativa (hemp): 115699193
Help
Entry
115699193 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115699193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115699193
03012 Translation factors [BR:
csav03012
]
115699193
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115699193
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115699193
Translation factors [BR:
csav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115699193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
Rad17
BEX
ATPase
FoP_duplication
NACHT
Motif
Other DBs
NCBI-GeneID:
115699193
NCBI-ProteinID:
XP_030482339
LinkDB
All DBs
Position
8:complement(19002101..19009399)
Genome browser
AA seq
1068 aa
AA seq
DB search
MSKPIINGRVLKIFPNLSLRSPTARTITYYCSFFSSLSIPNQLHLLPPRLSSIRRHYLQI
STPSMSYRPNSRGGPNSRGGRNSGGGRGGGAGRRGGGGGGRGGGRGEQRWWDPVWRAEKL
REKASEMEALDENEWWGKIEQMKGGGEQELIIKRNFSRADQQTLADMAHQLGFHFHAYNK
GKALVVSKVPLPDYRADLDDRHGSTQKEIRMTTEIERRVGNLLDNSQSRVGVPKNSSLEA
TGSTAQRGIQSSADGDMTQLVSPLETDSIRQKLSLELKEKQEKMKTSDSLKTMQSFREKL
PAFKMKSQFLKAVAENQVLVVSGETGCGKTTQLPQFILEEEISCLRGADCNIVCTQPRRI
SAISVSARISSERGESLGESVGYQIRLESKRSSQTRLLFCTTGVLLRQLVQDPLLTGVSH
LLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSNYFGNAPTIHIPGFT
FPVTDLFLEDVLEKTHYSIKSESGNFDGNSRRRRQKDSKKDPLTELFEEVNIDSQYRTYS
TSTRKSLEAWSGSQLDLGLVEASIEHICRHEGPGAILVFLTGWDDISKLLDKVKGNRFLG
DPSKFMVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDCGKAKE
TSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPKIIHDEMLQYQLPEILRT
PLQELCLQIKSLQLGTAGSFLAKALQPPDSLAVQNAIELLKTIGALDDREELTPLGRHLC
TLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPFVMPIERKEEADAAKRSFAGDSCS
DHIALLKAFEGWKEAKRNGNDRAFCWENFLSPVTLQMMEDMRMQFLDLLAGIGFVDKSRG
PAAYNQYGQDLEMVCAILCAGMYPNVVQCKRRGKRSAFYTKEVGKVDIHPASVNAAVHLF
PLPYMVYSEKVKTTSIFIRDSTNISDYALLLFGGNLIPSKTGEGIEMLDGYLHFSASKSV
LDLIRKLRGELDKLLNRKIEEPGFDISREGKGVVTAAVELLHSHNIRY
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacctattattaatgggcgagtgttaaaaatctttccaaatctctcactaaga
tcccctacagcgcggaccatcacgtactactgctccttcttctcttcactctccattccc
aaccaactccacctccttcccccgcgactatcttccattcgccgccattacctccagatc
tcgactccctcaatgtcttaccgccccaactctcgaggtggccccaactcccgtggcggc
cgcaactccggtggcggtcgcggcggaggtgctggccgccgcggtggcggaggaggaggc
cgtggtggtggacgaggagaacagaggtggtgggaccctgtctggcgtgctgagaaactg
agggaaaaagcttcggagatggaagctcttgatgaaaatgaatggtggggtaagatagag
caaatgaaaggaggaggagaacaagagttgataattaagcgaaactttagtcgagcagac
cagcaaactctagctgacatggctcatcaacttgggtttcacttccatgcatataataag
ggcaaggctcttgttgttagcaaagttccattgccagattaccgggcagatcttgatgac
cgtcatggctctactcagaaagagattagaatgactacagaaattgaaaggcgagttgga
aatctgctggataactcacagtcgcgggtaggagtacctaaaaatagctctttagaagca
acaggctcaacagctcaaagaggcatacaatcttccgctgatggagatatgactcaactt
gtctccccccttgagactgattctatcaggcaaaaacttagccttgagcttaaggagaag
caggaaaaaatgaagacaagtgacagcttaaaaacaatgcaatcatttcgggagaaactt
ccggcattcaaaatgaagtctcagtttctgaaagctgttgcagaaaatcaggtattggta
gtttcaggagaaacaggttgtggcaaaacaacacaacttcctcaattcattctagaagag
gagatatcatgtctgcgtggtgcagattgtaatatagtttgcactcaacctcgccgtata
tctgctatttctgtttctgctcgtatatcctcggaaagaggagaaagtcttggtgaaagt
gttggctatcagatccggcttgaatctaagcgttcatcccaaacacgactcttattttgc
acaactggagtattacttcgccaattggtccaggatccactattaaccggtgttagccac
ttgcttgttgatgaaatccatgaaagaggcatgaatgaggactttttactaataattttg
cgtgatcttcttcctcgccgcccagatttacgtcttattctaatgagtgcaacgatcaat
gctgacttgttctctaactactttggaaatgccccaaccatacatataccaggctttact
tttcctgtaaccgacttatttcttgaagacgttttagagaaaactcactatagtataaag
tcagagtctggtaacttcgatggaaattcaagaagaagaagacaaaaagattccaagaag
gacccgttaactgaactatttgaggaagttaatattgattctcaatacagaacttatagc
acatctacaagaaagtctcttgaagcgtggtctggttcacaacttgatttgggtctggta
gaagcaagtattgaacatatatgtcgccatgaaggtcctggtgcgattcttgtattcctt
acgggatgggatgacatttctaagctacttgacaaagttaagggaaacagattccttgga
gatccaagcaaatttatggttcttcccttacatggatctatgcctactatcaatcaacgg
gaaatatttgatcgtccaccccctaacaaaagaaaaattgtgctggcaacaaatattgct
gagagcagtatcaccatagatgatgttgtgtatgtgatagactgtggcaaggcaaaggaa
actagttatgatgctcttaacaaactggcatgtcttttaccttcgtggatttcaaaagct
tcagcacatcagagaagagggcgtgctggacgtgtgcaacccggggtttgttataaattg
tacccaaaaattatacacgatgaaatgcttcagtatcagttgcctgaaattctccgaaca
cctctgcaagagttgtgcctccagattaaaagcttgcagcttggaactgctggatcattt
cttgcaaaggcacttcagccaccagattcccttgccgtccaaaatgcaattgaacttctt
aaaactataggagctttagatgatagggaggagcttactccacttggtcgccatctttgc
actctgccgttggacccaaacattgggaagatgctattgatggggtctatctttcaatgc
ctgaatcctgccttaacaattgctgctgctcttgctcatcgtgatccgtttgtcatgccc
atagagaggaaagaggaagctgatgctgcaaaaaggtcctttgccggtgattcttgcagt
gaccacatagcactcctcaaagcttttgaaggatggaaagaagcaaagcgtaacggaaat
gatagagcattctgttgggagaactttttatctccggtaactttgcagatgatggaggat
atgagaatgcagtttctagatctgttggcgggtattggctttgtggacaaatccaggggt
cctgctgcatacaaccagtatggtcaggatttggagatggtatgtgcaattctttgcgca
gggatgtacccaaatgttgtccagtgcaaaagaagaggaaaacggagtgcgttttacacc
aaagaagtggggaaagtcgatatccaccctgcatctgtcaacgcggcagttcatctcttc
cctctcccttacatggtttacagtgagaaagtgaaaacaaccagcattttcatccgggac
tcaacaaatatatcagattacgccttactcctgtttggcggtaacctaattcctagtaaa
acaggtgaaggtatcgaaatgctcgacggttatctccatttctctgcatcaaagagtgtt
ctagacttaattcggaagttacgcggggagcttgacaagcttctaaacaggaagatcgaa
gaaccggggtttgacatctccagagagggaaagggagtagtcacagctgcagtagagtta
ttgcacagtcataacataagatattaa
DBGET
integrated database retrieval system
