Cannabis sativa (hemp): 115699205
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Entry
115699205 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115699205
KO
K12830
splicing factor 3B subunit 3
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115699205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115699205
03041 Spliceosome [BR:
csav03041
]
115699205
03036 Chromosome and associated proteins [BR:
csav03036
]
115699205
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115699205
Spliceosome [BR:
csav03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
115699205
Complex B
115699205
Complex C
U2 SnRNP specific factors
115699205
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
115699205
TFTC complex
115699205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
DUF7629
Motif
Other DBs
NCBI-GeneID:
115699205
NCBI-ProteinID:
XP_030482354
LinkDB
All DBs
Position
8:20227030..20236308
Genome browser
AA seq
1384 aa
AA seq
DB search
MALSEEECSSAKSRSSSSAASSTSNHYLAKCVLRGSVVLQVVYGRIRSPTSLDVVFGKET
SIELVVIGEDGIVQSVSEQPVFGTIKDLAVLPWKDKFSPQNPQMLGKDFLLVLSDSGKLS
VLSFCNEMHRFFPVTQVHLSNPGNLRDQLGRLLAVDSSGSFIAASAYEDRLAMFSVSVSA
GCDIIDKKIIYPPENGGDVSTARSIQKNNISGTIWGMCFISKDPYQPSKGHNPVLAVLLN
RRNAVLNELLLLEWNIRDDDVSLLSQFVEDGPLAYDIVEVPHSYGYAIMFRVGDALLMDL
RDALTPCCVYRTNLNFLPHAIEEQNFSEESIRAQHDVDDEGLFNVAACALLELRDYDPMC
IDSDNSNIKISYKHACSWSWEPGNTKNPRMIFCLDTGEFFLIQLGFDLGGLRVTQSDCLY
KGLQSKALLWVEGGFLAALVEMGDGMVLKLEDEKLIHNSPIQNIAPVLDMSIVDYHDEKH
DQIFACCGVVPEGSLRIIQSGISVEKLLRTAPIYQGITGTWTVRMKVTDLYHSFLVLSFV
EETRVLSVGLSFTDVTDSVGFQPDVCTLACGLLNDGLLIQIHQHAVRICLPTKVAHCDGV
SLPSPVCKSWFPENMNINLGAVGENLIVVSTSNPCLLFILGVRMISEYNYEIYEMQHLKL
KYELSCISIPQKSFERKSTNHPMDVGDESCVASLSTEVDISKSFVVGTHKPSVEVLLFDP
DDGLRHLAIGTIALTNITGTTVSGCVPQDVRLVFVDRFYVLCGLRNGMLLRFEWPIASSV
PTSVLPDSFVSVDIDSDFSSMSAPNSFGLQSNYIELSEKTVSGVPIDLQLIAIRRIGITP
VFLIPLSGSLNADIIALSDRPWLLHTARHSLSYTSISFQSSTHVTPVCSVDCPKGLLFVA
ENSLHLVEMIHSKRLNVQKFNLGGTPRKVLYHSESRLLLVMRTDLTYDSCSSDICCVDPI
SGAVISSFKFEHGETGKSMQLVRAGNEQVIVVGTSLSSGPAIMPSGEAESTKGRLIVLCL
EHAQNSDSGSMTFCSKAGSSSQRASPFREVVAYATEQLSSSSLCSSPDDNSSDGIKLEET
EAWQLRLSYSLAWPGMALAICPYLERYFLASAGNIFYVCGFSNDNTRVKKYAMGRTRFMI
TSLTAHFTRIAVGDCRDGVLFFSYQEDTKKLEQLYCDPSQRLVADCILKDVDTAVVSDRK
GSIAVLSCTDHLEDNASPECNLTVSCAYYMGEIAMSIKKGSFSYRLPADDVLNGGDLKID
STHNTIIASTLLGSIITFIPLSREEYELLEAVQARLVIHPLTAPILGNDHNEFRRRENPT
GVPNILDGDMLTQFLELTSMQQEAVLLFPLGSRDAVSSSMKSSSSPLPINQVVQLLERVH
YALN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctcggaggaggaatgctcttccgccaaatcccgatcgtcatcttccgcggcc
tcttccaccagcaatcactacctcgccaagtgcgtccttagaggaagtgtcgttcttcaa
gtcgtctatggtcgaatccgctctcctacctcactcgacgtcgttttcggcaaggagact
tctatagaactggttgtaataggcgaagatgggatagtgcaatctgtgagcgagcaacct
gtgtttggcaccattaaagaccttgccgttctgccctggaaagacaagttttcgcctcag
aatccgcagatgctaggtaaagattttttactagttctttctgattctgggaagctctcg
gttctatctttttgtaatgaaatgcacagattcttcccagtgacgcaagttcacctttca
aatcctggaaatttgagggatcaactcggaagattgcttgctgttgattccagtggatct
ttcattgctgcaagtgcctatgaagatcgattggctatgttctctgtttcagtatctgca
ggctgtgatatcattgataagaaaataatttatcctcctgaaaatggaggagatgtaagc
acagctagaagcattcaaaagaacaatataagcggtaccatatggggaatgtgctttatt
tcaaaagatccttatcagccaagtaaggggcataatcctgtacttgccgttcttttgaat
aggagaaatgcagtccttaatgagcttctgttattggaatggaacattagagatgatgat
gtttctttgttatcgcaatttgttgaagatggacctttggcatacgacattgttgaagtt
cctcattcctatggatatgccatcatgttcagggtgggtgatgcactcttaatggatctt
agagatgctcttacaccctgttgtgtctatcgaacaaacttaaatttcttaccccatgca
attgaggagcagaatttcagtgaagagtcaatcagggcacaacatgatgttgatgatgaa
ggtttgtttaatgttgctgcctgtgctttgctggagcttcgggattatgatcctatgtgt
atagatagtgacaatagcaatataaagattagctacaaacatgcatgttcgtggagttgg
gaaccaggaaatactaaaaatccgagaatgatcttttgtctagacactggagaatttttt
ctaattcaacttggcttcgatttgggtggtcttagggttactcaatctgactgtctttac
aaaggattacaatcaaaggcgcttttatgggttgaaggtggctttcttgctgctcttgtt
gagatgggggatggaatggttttgaaattggaagatgaaaagctgattcacaacagtcct
attcaaaacattgcgccagtactggatatgtcaattgtagattaccatgatgagaaacat
gatcaaatttttgcctgttgtggagtggtgccagagggttcgctaaggattattcaaagt
ggtattagtgtagaaaagctacttaggacagctcctatctatcaaggcataactggtacc
tggacagttcgaatgaaagttactgatttgtaccattcttttcttgttctgtcatttgtt
gaagagaccagggtattatcagttggtttaagctttactgatgtgactgattcagttggt
ttccaaccagatgtttgtactttggcatgcggccttttgaacgatggattgctcatccag
attcatcagcatgcagtaagaatttgtttgcccaccaaagttgcccactgtgatggagtc
tctttgccttctccagtttgtaagtcttggttccctgaaaatatgaatatcaatttgggg
gctgttggagaaaatttaatagttgtctctacttccaacccttgtcttctattcattctt
ggggtcagaatgatatcagaatacaactatgaaatatatgagatgcaacatctgaaactg
aaatatgagttatcatgcatttccattcctcaaaaaagttttgagcgcaaaagcacaaat
catcccatggacgtgggagatgagagttgtgtggcttctctttcaactgaagttgacatc
agtaaatcttttgttgttggcacacataagccttcagtggaagttttgctttttgatcct
gatgacggcctaagacatcttgcaattggaacgattgcacttacaaatataacgggaact
actgtcagtggttgtgttcctcaagatgtaaggcttgtatttgttgatcggttttatgtc
ctttgtggacttagaaacgggatgctgcttcgatttgagtggcccattgcctcttcagtt
ccaacatctgtattacccgactcttttgtttcagtggatatagattctgatttttctagc
atgtcagcaccaaatagttttggtttacaaagcaattatattgaattatctgagaagaca
gtgagcggggttccgattgatcttcagttgattgccattcgccgcattggcattacccct
gttttcctaattcccttgagtggctcgcttaatgctgatataattgctctgagtgacaga
ccttggttgttgcacactgcaaggcatagtctctcttatacatctatttcatttcaatct
tcaacacatgtaactcctgtatgctctgttgattgccctaagggtcttttgtttgtagca
gagaacagtctacatttggtggagatgattcatagtaagaggcttaatgtgcagaaattc
aatcttggaggcactcctcggaaggtcctatatcatagtgaaagcaggttattgcttgtg
atgaggactgatttaacatatgattcatgttcatctgatatatgttgtgtggatcctatt
agtggggcagtaatctcatcttttaaatttgagcatggagaaacagggaaatcaatgcag
ttagtaagggcagggaatgagcaggtcattgttgtcggaaccagtctatcttctggtcca
gccataatgcccagtggcgaggctgaaagtacgaagggccgtcttattgttctgtgtctt
gaacatgcgcagaactcagatagtggttcaatgactttctgttcaaaggcagggtcatct
tctcaaagagcttcaccatttcgtgaagttgttgcatatgctacagaacagctatctagc
agtagcctgtgcagtagcccagatgataatagctccgatggaattaaacttgaggaaact
gaagcatggcagttacggttgtcatattcacttgcatggcctggaatggcacttgctatc
tgcccttatcttgagcgttattttttggcatctgccggtaatattttttatgtatgtggg
ttttcaaatgacaatacccgagtgaaaaaatatgcgatggggaggacaaggtttatgatt
acgtctctaacggcacacttcacaagaattgctgttggtgattgtcgtgatggagtcctc
tttttttcttatcaagaagatactaaaaaactggagcaactttactgtgatccatcccaa
agactagttgctgattgtattctcaaggatgttgatactgctgttgtgtcagatcgtaag
ggcagcattgctgttctatcatgcacagatcacttagaagataatgctagtccagagtgc
aacttaacagtaagctgcgcctattatatgggtgagatagctatgagcatcaagaaggga
tcattttcgtacagacttccagcagatgatgtattgaatggtggtgacttgaagattgac
tctacacataatactattattgccagcactctgttaggaagtataataactttcattcct
ctgtcaagagaagaatacgaactcttggaagctgtccaagctagattagtgattcatcca
ttaactgctcctattcttggaaatgatcataatgagtttcgaagacgagaaaacccaact
ggagtaccaaatatacttgacggtgatatgcttactcagttcttggaacttacaagtatg
caacaagaggctgtattattgtttcctcttggctcaagagatgctgtaagctcaagcatg
aaatcatcgtcatcacctttacctatcaatcaggttgtacaacttctggagcgagttcat
tatgctctaaactaa
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integrated database retrieval system
