Cannabis sativa (hemp): 115699350
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Entry
115699350 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115699350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115699350
03012 Translation factors [BR:
csav03012
]
115699350
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115699350
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115699350
Translation factors [BR:
csav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115699350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
R3H
HA2_C
Ank_2
Ank_5
nSTAND3
HA2_N
AAA_19
ATPase
AAA_22
ResIII
Ank
AAA_7
Rad17
ABC_tran
AAA_25
PhoH
AAA_23
AAA_16
Motif
Other DBs
NCBI-GeneID:
115699350
NCBI-ProteinID:
XP_030482564
LinkDB
All DBs
Position
8:47293528..47300830
Genome browser
AA seq
1131 aa
AA seq
DB search
MGKNKNKTPIPEETKILLLRALKDFQSSKDTAYTFDASLSNFERALVHETCRKMGMTSRS
GGLGSARRITVYKRETKSDEKIEKLTVVKFSEESKEALYDLFMRHPPGDGEEQKKMIGGT
GVKVVANSRRKTTDIFLRPSMSKADIAQKVQSLASRVKNVAALTQITKDRSKLPITCFKD
AITSTIESHQVVLISGETGCGKTTQVPQFLLDYVWGKGEVCKIVCTQPRRISAMSVAERI
SSERGQNIGEDIGYKIRLESAGGRHSSIVFCTNGILARILVSNGVNTEATMRHKNQEISE
ITHIIVDEIHERDRYSDFMLAIMRDALPSYPHLRLILMSATLDADRFSQYFGGCPIIRVP
GFTYPVKTYYLEDVLSIIHAKGNDNLGSNISGATREESELIEEDKLVLDDAINLAWLNDE
FDPLLELVSTEGTQKVYNYQHSGNGLTALMVFAGKGRVGDVCMLLSFGADCHLRANDGTT
ALELAEKKGQQETAEILKQHMQNALTSSLEEKQLVDKYLERINSEHTDVVLIGKLLMKIC
TDSQDGAILVFLSGWDDINKTRDILLMNPLFKDTSKFNILSLHSMIPSQEQKKVFKCSPP
GCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASARQREGR
AGRCQPGICYHLYSKVRAASLPEFQVPEMRRMPIEELCLQVKLLDPDCKIDDFLQKTLDP
PVRETIRNAIIILQDIGALSGEEKLTELGAKLGSLPVHPVICRMLFFAVLMNCLDPALTL
ACAADYKDPFTLPMSPYQKKKANDAKYKFASMYGGHSDQLAVVAAFECWKTAKLRHQGGQ
FCAENFVSSSTMSMLNGMRKQLQNELIQTGLIPENISSCSLNARNSGILHAVLVAGLYPK
VGRLLRPYQKDKRIFVKTAGNDKVRLHTQSINSTLSFEENDSPLVMYDEVTRGDGGMFIK
NCTVVGPLPLLFLSTEIAVAPDDSVDDDDNNNDDFGSDNESDEDKVMSSPENSVVVIVDR
WLYFKSTALDIAHIYLLKERLSAAILFKVKNPKTILPPILEASVSAIARVLSCDGLSGVS
FLNSKIERSLNNTPNFSSISGRPGTATNPREASSYGSHGDSYKNRHKNGAG
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaataagaacaaaactcccattcctgaggaaactaagatcctcctactccgg
gcattgaaggacttccaatcctccaaagacacagcatatacatttgacgctagcctgtcg
aactttgaacgagctctagtgcacgaaacatgcagaaaaatgggaatgacatcgaggagt
ggtgggcttggatccgcacgccgcattactgtttacaaacgtgaaacgaagagtgatgag
aagattgagaagctcactgttgtgaaattttctgaggagtcaaaagaagcattgtatgat
ctatttatgcggcatccgcctggtgatggggaagagcagaaaaaaatgattgggggaact
ggtgtaaaagttgtcgccaactcacgtcgtaagacgactgatatttttcttaggccatca
atgagcaaggcggatattgcacagaaggtgcaatcacttgcttctagagtaaagaatgtt
gcagctttgacacagattactaaagataggtccaaacttccaattacttgttttaaagat
gcaattacatcaacgattgaatctcaccaggtagttcttatatctggtgagacagggtgt
gggaagaccacgcaggttccccaatttcttttggactatgtgtggggcaagggtgaagtt
tgtaaaatagtttgtacacaacctcgacgtatctctgccatgtcagttgctgagagaatc
tcttctgaaagaggacaaaatattggcgaggatattggatacaagatacgattagaaagt
gcaggtgggaggcactcgtcaattgtattctgcacaaatgggattttagcaaggattcta
gtttctaatggtgtcaacactgaagcaacaatgagacataaaaaccaagagatttctgag
atcactcacattattgtggatgaaattcatgaacgggatcgctactctgatttcatgctt
gcaattatgagagacgcgcttccctcataccctcatctgcgtctgatactgatgagtgca
actcttgatgctgatcgtttttcacaatattttggtggctgcccaataattcgtgttcct
ggattcacttatcctgtcaaaacttactatttggaggatgtactttctatcattcatgcg
aaaggcaatgataaccttggtagtaatatatcaggtgctacacgtgaagaatctgagtta
atagaggaagataagcttgttttagatgatgctattaatttggcttggttaaatgatgag
tttgatccccttctagaattggtttctactgaaggtactcaaaaagtgtataattaccag
cattctgggaatggtttgactgcgttaatggtgtttgctggtaagggtagagttggagac
gtttgcatgcttctatcttttggtgcagactgccatctacgagccaatgatggaacaact
gcactcgaattggctgaaaaaaaaggccaacaagaaacggctgagatacttaaacagcat
atgcaaaatgctcttactagctccttagaagaaaaacagttggttgataaatatttagaa
cgaatcaactcagaacacactgatgttgttctcattgggaagttgctaatgaaaatttgt
actgattcacaagatggagctattcttgtttttctctcagggtgggatgatataaataaa
acccgtgacatattgcttatgaaccctttattcaaggatacttccaaatttaatatatta
tctcttcattcaatgattccatctcaagagcaaaagaaggttttcaagtgctcacctccc
ggttgccgcaagattgttctatcaactaatattgcagaaactgctataactattgatgat
gttgtttatgtaatagacagtggtaggatgaaagagaaaagttacgatccgtataataat
gtatcgactcttcaatcttcttgggtttcaaaagccagtgccaggcagagagagggacgt
gcaggtcgttgtcagcctgggatatgttatcatctttattctaaggttcgtgcagcaagc
ttaccagaatttcaagttcctgaaatgaggagaatgccaattgaggaactttgtctgcag
gtgaagctgcttgatccagattgtaagatagacgatttcttgcagaagacattggatcct
ccagttcgtgagaccataagaaatgctattattattcttcaagacattggagctttgtca
ggtgaagagaaacttactgaacttggagcaaagctaggttctctccctgttcatccagta
atatgcaggatgcttttctttgccgtattgatgaactgcctggaccctgcgttgactctg
gcatgtgctgctgattacaaagacccatttactcttcccatgtcaccttatcaaaagaaa
aaagctaatgatgctaaatataagtttgcttcaatgtatggaggccatagtgatcagcta
gcagtcgtagctgcatttgagtgctggaagactgcaaagttaagacaccaagggggacaa
ttttgcgctgagaattttgtctcgtctagcaccatgtctatgttgaatggtatgcggaaa
cagctccaaaacgaacttatccaaactgggcttattcctgagaatatctcaagttgcagc
ttgaatgcacgcaactcaggtatactccatgctgttcttgtggctggtttgtatcctaag
gtgggcagattgcttcggccttatcagaaggataagaggatattcgtgaaaactgctggt
aatgataaagttcgcttgcatactcaatccattaattccacattatctttcgaagagaat
gatagtcctctagttatgtatgatgaggtcactcgaggagatgggggtatgttcattaag
aactgtaccgttgttggaccattgcccttgttattcctttcaacagaaattgctgttgct
ccggatgacagtgttgatgatgatgacaacaataacgatgattttggaagtgacaatgag
agtgatgaagacaaagttatgtcatcgcctgaaaattcagttgtagtcatagtggaccgg
tggctttattttaagtcaacagcacttgatattgctcatatttacttgctaaaggagcga
ttatctgcagcaattctattcaaggttaaaaatccaaaaacaattctgcctcctattctt
gaggcctcagtatctgccatagctcgcgttctatcttgtgatggtctatctggggtctca
tttcttaattcgaaaatagaaaggagcctgaacaacacacctaattttagctctatttcg
ggtaggccaggtacagctacaaacccacgtgaagcatcatcatatggttcacatggagat
tcatataagaaccggcataagaatggtgccgggtaa
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integrated database retrieval system
