Cannabis sativa (hemp): 115699400
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Entry
115699400 CDS
T08987
Name
(RefSeq) pre-mRNA-processing protein 40C
KO
K12824
transcription elongation regulator 1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115699400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115699400
Spliceosome [BR:
csav03041
]
Complex A
U1 snRNP components
U1 related factors
115699400
Complex B
115699400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
115699400
NCBI-ProteinID:
XP_030482648
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All DBs
Position
8:14362871..14373190
Genome browser
AA seq
797 aa
AA seq
DB search
MTTPAPNLGSAPPPPQWALPPPPRQGFSMAPPGMPLAPSDSSSTVIRPNTMPPPGSGSVP
LNSHFHPQLGHSSYQSMPPPMAAAPHPPPQGLWLQPPQMGGAPPRLPLNINMQPYHGGPF
PVMVPQHVMPPSVHVPDSQPPGVTPLSSAVGIKTDLSSSGDGGNQGTEQSDPWTAHKTET
GVVYYYNALTGVSTYDKPPDFKGEDEKIYVQPIPVSMINLLGTDWVLVSTSDGKKYYYNN
KTKVSSWQIPNEVTELRKKQDVEIPKEHSLSVPNTNVLAEKESTPVILNAPAINTGGRDA
MALRPPNVQGSSSALDLIKKKLQEFGAPVTSSPSPVQSGMASEPNGSKAVDATAKGQLSD
NSKDKLKDANGGGNVTDSSSDSEDVDSGPTKEECILQFKEMLKERGVAPFSKWEKELPKI
VFDPRFKAIPSYSTRRSLFEHFVKTRVEEERKEKRAAQKAAIEGFKQLLDEASEEIDQKT
DYQIFRKKWGDDERFLALDRKDREHLLNERVLPLRKAAEEKAQAIRAATASSFKSLLQEK
GDITVNSRWSRVKDSLRDDPRYKSVKHEDREALFNEYLSDLRAVEEESEREAKAKREEQD
KLRERERELRKRKEREEQEMERVRIKVRRKEAIVSYQALLVETIKDPQVSWTDAKLKLEK
DPQGRAANPELDSSETEKLFREHIRMLNERCAREFKALLAEVLTADAAAQETDDGKTALN
SWSTAKRLLKSDPRYNKMPRKDRESLWRRYADDMLRKQKSEKMELDSKDDKKVDHRSRSS
GDYGRLSSGLRGSHDRR
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgacaactccggcgcctaatttgggctccgcgccaccgccaccgcaatgggcgctgccg
ccgcctcctcgtcaaggtttctccatggctcctcctggtatgcctcttgctccctcagat
tcttcctctacagtcatcagacccaacactatgccaccaccaggctcaggctctgttccg
ctcaattcacatttccatccccaattaggtcattcctcgtaccagtctatgcctcctccc
atggcggcggctcctcatcctcctcctcagggactgtggttgcaacctcctcagatggga
ggtgctcctcctaggttaccgttgaatatcaatatgcagccgtatcatggcggtcccttc
cctgtgatggttccacaacacgttatgcctccttctgttcatgttcctgattctcagcct
cctggtgttactccgttgtcttctgctgtggggatcaagactgacttatcctcttcaggt
gatggtggcaaccaaggtacagaacagtcggatccttggactgcccacaagactgagact
ggagttgtatactactataatgctttgactggagtttcaacttatgataaacctcctgat
tttaaaggagaggatgagaaaatttatgtgcagccaattcctgtatctatgattaacttg
cttggaactgattgggtattggtcagcacaagtgatggaaagaaatactattacaacaat
aaaactaaggtaagtagctggcagattccaaacgaggtaacagaactaaggaagaagcag
gatgttgaaattccaaaagaacattccttgtcagtgccaaatactaatgtattggcagaa
aaagaatctactccagtaattttgaatgctcctgccattaacacaggtggtcgtgatgca
atggctcttagacccccaaatgtccaaggatcatcgtctgctttagacttaataaaaaag
aagctgcaagaatttggagctcctgttacttcttcaccaagtcctgtacagtctggaatg
gcatcagaaccaaatggctctaaggcagttgatgctacagctaaaggccaactgagtgat
aacagcaaagataaacttaaagatgccaatggaggtggaaatgtgacagactcttcttca
gattcagaagatgtagacagtgggcccacaaaggaggagtgcattcttcaatttaaggag
atgcttaaggaacgaggcgtggcaccattctcaaaatgggagaaggaacttccgaagatt
gtttttgatccacggtttaaggctattccaagctactccactaggagatccttgtttgag
cactttgttaaaacacgtgtggaggaggaacgcaaggaaaaaagagctgctcagaaggca
gcaatagagggttttaagcaattactggatgaagcctcagaggagattgaccagaaaact
gattatcaaatttttcgaaagaagtggggtgatgatgaacgatttttagccttggaccgc
aaggatcgagagcacttgttgaatgaaagggtccttcctttgaggaaggctgctgaagaa
aaagcccaagcaattcgtgcagctactgcaagtagttttaaatctttgcttcaagagaaa
ggagatataactgttaattcacgctggtcaagggtgaaagatagcctgagggatgatcca
agatacaaatctgttaagcatgaagatagggaagctttatttaatgagtatctatctgac
ttgagagctgtagaagaggaatcagaaagagaggccaaagccaaaagagaggagcaggat
aaactaagggaaagggagcgggagttgcgtaagaggaaagagagagaggaacaagaaatg
gagagggtacggataaaagttcgaagaaaggaagcaattgtgtcatatcaagctttactt
gtggagacaataaaagacccccaggtatcttggacagatgctaagctgaaattggagaag
gatccacaaggtcgcgcagccaaccctgaacttgattcatccgagactgaaaagcttttt
cgcgaacacattaggatgttgaatgagcgatgtgcacgcgagttcaaagctctgttggca
gaagtgctgactgcagatgctgctgcccaagaaacagacgacggtaaaacggctcttaat
tcatggtcaacagctaagcgtcttctgaagtccgatcccaggtataacaagatgccaagg
aaagacagagaatcattatggcgacgatatgcggatgacatgctgaggaagcaaaagtca
gaaaaaatggaacttgattccaaggacgacaagaaagtagatcatagaagtagaagctct
ggtgattatgggaggctgtcatcaggtttgcgaggatcgcacgatcgaaggtag
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