Cannabis sativa (hemp): 115699438
Help
Entry
115699438 CDS
T08987
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav04120
Ubiquitin mediated proteolysis
csav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115699438
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
115699438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csav04121
]
115699438
Enzymes [BR:
csav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115699438
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115699438
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115699438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
zf-C3HC4_2
Beta-prop_EIPR1
Beta-prop_DCAF4
EIF3I
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WD40_like
WD40_RFWD3
Beta-prop_CAF1B_HIR1
zf-RING_2
zf-C3HC4_3
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_1st
Beta-prop_DCAF12
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
eIF2A
Beta-prop_Vps41
WDR90_beta-prop_4th
zf-RING_5
Beta-prop_SPT8
U-box
Beta-prop_IFT140_1st
DUF1664
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
115699438
NCBI-ProteinID:
XP_030482711
LinkDB
All DBs
Position
8:39618626..39624983
Genome browser
AA seq
677 aa
AA seq
DB search
MMEESSTGALVPAVKSELPSMSISGAASLDPRAETGGNAAGVPAELDKDFLCPICMQMIK
DAFLTACGHSFCYMCIITHLRNKNDCPCCALYLTTKQLFPNFLLDKLLKKTCASQISKTA
SPVEHFRQSLQQGCEVSIKELEVLLALLADKKRKMEQEEAERNMQILLDFLSVLRKQKVD
ELNEVQTDLQFIKDDISSVERHRMDLYRARDRYSLKLRAVGDDSSARKSWPSLIEQNTSG
PVSSSFNLRGVMSSGNHQIKKADGWGQINSSGLQRKDSVSGSDSQYANSSGLAVVRKKRV
HAQFKDLQECYLQKRRQLANRLNNSQERDKNAILRDGYNAGLANFQSVLSTFTRYSRLRV
IAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSTVVNEPAELHCPVVEMS
TRSKLSCLSWNKFVKNHIASSDYEGIVTVWDVNTRQSVMEYEEHEKRAWSVDFSRTEPSR
LVSGSDDCKVKVWCTQQEDSVINIDMKANICCVKYNPGSSNYVAVGSADHQIHYYDLRNI
SQPLHVFSGHKKTVSYVKFLSNTELASASTDSTLQLWDVKENKPIRTFKGHTNEKNFVGL
SVNSEYIACGSETNEVFVYHKEISNPVTWHRFGSPDLDDVEDDGASYFISAVCWKRDSPT
MLTANSQGTIKVLVLAA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggagagttcaactggggcgctggtcccggcggtgaagtcggagcttccttcc
atgtcgatctccggcgccgcttcgctggatccccgagccgagacgggcgggaacgccgct
ggagttccggcggaactcgataaggattttctttgtccgatttgtatgcagatgattaag
gacgcatttcttacggcttgtggacatagcttttgttacatgtgtatcatcactcacctt
cgtaacaagaatgattgcccttgctgcgctctatacctcaccacgaagcagctcttcccc
aatttcttgctcgacaagctacttaagaaaacttgtgctagtcaaatatcgaagacagca
tcccccgtggagcattttcgtcagtcgttacaacagggttgtgaagtgtctatcaaggag
cttgaagttctcttggcactcctagctgataaaaagaggaaaatggaacaagaggaagct
gagagaaacatgcaaattttgctcgactttttgagtgtcttaaggaagcaaaaagtggat
gagctcaacgaggtgcaaactgatctccagtttattaaagacgacataagctctgtcgaa
agacataggatggatttgtatcgtgctagagataggtattccctaaagctccgggcagtt
ggagatgattcaagtgcaagaaaatcatggccttctttgattgaacagaataccagtggt
cctgtgtccagttcttttaatttacgtggtgtaatgtcttctggaaatcatcaaattaag
aaagctgatggatggggtcaaataaattcctctggactccagagaaaagattcagtgagt
ggatcagattcacagtatgctaattcatcagggctagctgtagttaggaaaaagcgagtc
catgcacagtttaaagacttgcaagagtgttacctgcaaaagcgacgtcaattggcgaac
cgattgaataattcacaagaaagggataaaaatgccatactcagagatggttacaatgca
ggtcttgcaaattttcaatcagtattgagtacatttacacgctatagccgattgagagtt
attgctgaacttcggcacggggatctctttcattcagccaatatagtatcaagcatagaa
tttgatcgtgatgatgagttatttgccactgctggtgtgtcacggcgcataaaagttttt
gatttctccacggttgtgaatgaacctgctgagctacactgtcctgttgttgagatgtct
acacgctcaaaacttagttgcttgagttggaacaaatttgttaagaaccatatagccagt
agtgattatgagggcatagtaactgtttgggatgtaaacactcggcagagtgtgatggaa
tatgaagagcatgagaaacgtgcatggagtgttgacttttcgcgtacagaaccatcgagg
cttgtatctggtagtgatgattgtaaggttaaggtttggtgcactcagcaggaagatagt
gttattaacattgacatgaaggcaaacatatgctgtgtcaagtacaatcctggatctagc
aattatgttgcggttggttcagcagaccatcagatccactattacgatttaagaaatatt
agccagccacttcatgtgttcagtgggcataagaaaactgtttcgtatgtgaaattcttg
tcaaacactgaacttgcctctgcatcaacagacagtacattacagttatgggatgtgaag
gaaaataagccgattcgtacttttaaaggtcacacaaatgagaagaactttgttggtctc
tcagtaaatagcgagtacattgcttgtggcagtgaaacaaacgaagtgttcgtctaccat
aaggaaatttcgaaccctgtgacttggcatagatttggttcgcccgatttggatgatgtt
gaagatgatggcgcatcttatttcattagtgctgtatgctggaagagagatagccccacc
atgctcaccgctaacagtcagggaaccattaaagtacttgttcttgcagcctaa
DBGET
integrated database retrieval system
