Cannabis sativa (hemp): 115699449
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Entry
115699449 CDS
T08987
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115699449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115699449
03036 Chromosome and associated proteins [BR:
csav03036
]
115699449
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115699449
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115699449
PBAF complex
115699449
GBAF(ncBAF) complex
115699449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
CsgF
Motif
Other DBs
NCBI-GeneID:
115699449
NCBI-ProteinID:
XP_030482726
LinkDB
All DBs
Position
8:complement(57581463..57584475)
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AA seq
545 aa
AA seq
DB search
MSMNNNNPPKNLGASSSPFGNAGMVPSSMGQNPNFPQSQGQPQIPAGFQGQYQLSQSQAQ
AIAHAQSKAQAHAQAQVQAAHAQFQAQLQAQGLSLNQNQGIVNMGSSSPNLSTPGSLGMK
RMPQKPPVRPPGFSPPNMMAPMRTMELTPAARRKKQKLPEKQLQDKVAAILPESALYTQL
LEFESRVDAALTRKKVDIQEALKTPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWSL
KIVGRILEDGIDPDQPGAVQKTNPLYPKFSAFFKRVTISLDQRLYPDNHIIVWENARAPA
PHEGFEVKRKGDKEFSANIRLEMNYIPEKFKLSQPLVEVLGVEVDTRPRIIAAIWQYVKA
RKLQNPHDPSYFNCDPPLQKVFGEEKMKFTMVSQKVSQHLFPPQPIHLEHKIKLSGNSPV
GSACYDVLVDVPFPIQRELSVLLANSEKSKEIDACDEAICGAIRKILEHRRRRAFFLGFS
QSPVEFINALIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPITGSD
APGSA
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgaacaataataacccacctaagaaccttggggcctcttcctcgccctttggt
aatgctggtatggttccctcatccatgggacaaaatcccaactttccccaatcacaaggt
caacctcaaatcccagctggctttcaaggacaatatcagttatcccaatcacaagcacag
gctatagcccatgcacagtcaaaagctcaggcccatgcccaagctcaggttcaagcagct
catgctcaattccaagctcagttgcaagctcagggtctatcccttaaccagaaccaaggg
attgtgaacatgggctcttcttcacctaacctttcgacgccaggtagtttaggtatgaaa
agaatgcctcagaaacctcctgtacgccctcctggtttttcgcctccaaacatgatggcg
cctatgagaacaatggaactcacgcctgcagctcgtagaaagaagcagaagcttcccgag
aagcagttacaagataaagtagcagccattctgcccgaatctgctctgtatactcagctt
cttgagttcgagagtcgtgttgatgctgctcttaccagaaagaaagttgacatccaagag
gctcttaaaaccccgccttgcattcaaaaaacccttcgcatttacgtgttcaacactttt
gcaaatcagatccgtaccataccaaaaaagcctaatgcagagcctccaacttggtctcta
aagatagttgggcggatcttggaagatggaatagatcctgatcagcctggtgctgttcag
aaaacaaaccccttgtacccgaagttctcagctttcttcaaaagagtaactatttcgctt
gaccagagactttaccctgacaatcacatcatagtatgggaaaatgctcgagcgccagcc
cctcacgaaggatttgaggtgaagagaaagggggataaagaatttagtgcgaatatacgg
ttggaaatgaactacattcctgagaagtttaagctatcacaacctttagtggaagttctc
ggtgttgaagttgatactcgcccaagaataattgctgctatttggcagtatgtgaaggct
agaaagttgcagaacccacatgacccttcatattttaattgcgatccgcctcttcagaaa
gtttttggagaagagaagatgaaatttaccatggtttctcagaaggtctctcagcatttg
ttccctccacaaccaattcatttggagcataagattaaactttcaggaaatagtcctgtg
ggaagtgcttgttatgatgtgttggttgatgttcctttcccaattcagagagaattgtct
gttcttttggccaactcagaaaagagcaaggaaatcgacgcctgtgatgaagccatatgt
ggagcaattagaaaaatcctcgagcaccgcaggaggcgggcttttttccttgggtttagt
cagtcaccggtggaatttatcaacgctttaatagaatcccaaagcaaggatctgaagctt
gtagctggagaaggaagtcgaagtgctgaaaaggagcgtcggtcagatttcttcaaccag
ccatgggttgaagatgctgttatccgttacttgaatcgcaagccaattaccggaagtgat
gctcctggaagcgcatga
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