Cannabis sativa (hemp): 115699992
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Entry
115699992 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115699992 isoform X1
KO
K06100
symplekin
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115699992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115699992
03019 Messenger RNA biogenesis [BR:
csav03019
]
115699992
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115699992
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115699992
U7-dependent histone pre-mRNA processing factors
115699992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Pkinase_C
CRM1_C
Motif
Other DBs
NCBI-GeneID:
115699992
NCBI-ProteinID:
XP_030483397
UniProt:
A0A803NMR0
LinkDB
All DBs
Position
X:complement(81341827..81367755)
Genome browser
AA seq
1331 aa
AA seq
DB search
MAGPPRDQALSLLAAANNHGDLAVKLSSLRQAKDILLSLDPSFAAELLPYLVELQSSPEV
LVRKSLLKLVEEIGLKAMEHCSVLMPVFLTLLRDDHHDAAKQSIISGSNFFSSVLQEMSL
QFQRCGKVERWLEELWSWMAKFKDGVFAIALEPGCVATKLLALKFLETYVLLFTSDSSET
EAPVAEGSRRPFNISQLVCGHPVLDSYTLMSEANRTLGILLNLLQSASSLPGPLAISVVN
CLAAIARKRPLHYSTVLTALLDFNPNFELMKGCHASSILYSIRTALLGFLRSTTPAIMES
RDSLVRALRTMNAGDAADQAIRQVDKMVKNAERALRDARLGKDDQLSSPLLVSGDLLKKR
SVPLDNEDSANNHELPSKKMRHDLETYLSVPVQSTDFWQDGSSVNGLSHDIPLLDGELTP
VEKMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMRHLPMTPPPLTVVGNFPV
PRQISSLNNPGQASSGSPRANSVQSPTLPVQMPFSSATSSLISDLPMANNFPTDSKRDPR
RDPRRLDPRRIATTGLALIPTVEEASSLQSECDGSFSLNKPISHSFGTRVESYSEPVVSM
EEEMEGPLISVVGQSVLKELLEESEEIAPAKQVKSSDPTDSAVYTSDDFVPEGFPDVAVK
DEVDTSYFPEFDQHSPDLSNASSSEDTCEDLPQLPVYMELSEEQQQSVRKFAVKRIIHSY
KHLCVTDCSQMRLALLARLVAQMDADDDVVVMVQKHIVVDYQEQKGHELVLHILYHLYSL
TTLDSVGNTSYPAAVYEKFLLAVATSLLDSFPASDKSFSKLLGEVPVLPDSALKLLGDLC
YADVTDQHGKDIRDVERVTQGLGAVWSLILGRPLYRQACLDIALKCAVHLQDEIRAKAIR
LVANKLYQLSYVVENIEQFATSLLHSAVDNHASDLEHLQSGSTVHRATGMVGSQDTSVSD
SQISDSGNSEIDSTREGQRVAHSTTTISILDAQRLVSLFFALCSKKPNLLQLVFNIYERA
PKIVKQAFHRHIPILIRALGSSNPELLSIISDPPQGSENLLMLVLQILTQETTPAPDLIA
TVKHLYETKLKDVTILIPMLSSLSKNEVLPIFPRLVALPLEKFQMALAHILQGSAHTGPA
LTPAEVLVAIHNIAPEKDSLALKKITDACSACFEQRTVFTQQVLARALSQMVEQTPLPLL
FMRTVIQSIDAFPSLVDFVMEILSKLVSRQVWKLPKLWVGFLKCVYQTQPHSFHVLLQLP
PPQLESALNKHANLRSPLAAFASQPNLISSLPRSTLAVLGLANERQMQQPHRSSSFNSSD
ASSSVRGATPS
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atggccggacctcccagagaccaagctctttctctactagctgccgccaacaaccatggc
gatttggcagtcaagctttcttctcttagacaggccaaggatattcttttgtccctcgat
ccttcttttgcggccgagcttttaccttatttggttgagcttcagtcctcccctgaggtt
cttgtccgaaaatcgctcctcaagttggtggaagaaattgggttgaaggcaatggagcat
tgctctgtgctgatgcccgttttcttgacacttttaagagatgaccaccatgacgcggcc
aaacaatcaattattagtggctcgaatttcttttctagtgttttacaagagatgtcattg
cagtttcaacggtgtggtaaagtggagaggtggcttgaagaactttggtcgtggatggcc
aagtttaaagatggcgtatttgctatagcattggagcctggctgtgttgcgacaaagttg
ctagcactgaaattcttggaaacatatgttttgctatttacatcggactcaagtgaaact
gaagctcctgttgcagaaggaagtaggcggccttttaatatttcgcagctggtttgtggt
cacccggttcttgactcatacacgctcatgtcagaggcaaataggactcttggcattcta
ttgaatttgctgcagtcagctagcagtttacctggtcctttggcaatctccgttgtgaat
tgtcttgcagctatagcaagaaagaggcctcttcactacagtacagttctcactgcgctg
cttgattttaatccgaactttgagttgatgaaaggatgtcatgcttccagtatcctgtat
tccataagaaccgcgctgttgggatttcttaggtctactaccccagctattatggagtca
agagatagcttagttcgtgctctacgaaccatgaatgctggagatgcagcagatcaagct
atccggcaagttgacaaaatggttaaaaatgctgaacgtgctttacgtgatgctcggctg
gggaaggatgatcaattgtcaagcccgctacttgtttcaggggatctgctaaaaaagaga
tctgtgcctttggacaatgaagactcagctaataaccatgagttaccttctaagaaaatg
cgtcatgatttagagacctatttgagtgtgccggttcaaagtactgatttttggcaggat
ggcagttctgttaatggtctgtcccatgatattcccttgttggatggtgaattaactcct
gtagaaaagatgattgcaatgattggtgctttgcttgctgaaggagaaagaggcgctgaa
tcacttgaaatccttatttcaaaaattcatcctgatttgttggctgatattgtcataact
aacatgaggcacttgcctatgacaccccctcccttaacagtggttgggaatttccctgta
cctcgccagataagttctttaaataatccaggacaagctagttctggatctcctcgagca
aattctgtgcaatccccaactctccctgtgcagatgcctttctcttctgctactagttct
ttgatttctgacttgcctatggcgaataattttcctaccgattcaaaacgagatccacgg
agggatccccgtcggctagatccacgtcgcatagctaccactggacttgcattaattcct
actgtagaggaggcttcttccttgcaatctgaatgtgatggttctttttctttgaataag
cctatttcacattcttttgggacaagagttgagagttattcagagcctgttgtctccatg
gaggaggaaatggaaggtccattgatttctgtggtgggtcaatcagttctcaaggagctt
cttgaagaatcagaggaaattgcccctgcaaaacaggtcaagtcttcagatcccacagat
tctgctgtttacactagtgatgactttgttccagaagggtttccagatgttgcagtgaaa
gatgaagttgatacgtcatattttccagaatttgatcagcattcaccagacctttcaaat
gcatcttcatctgaagatacctgtgaagatctacctcagcttccagtatatatggagcta
agcgaagaacaacaacaaagtgttagaaaatttgcagttaaacggattattcactcttac
aagcatttatgtgtgacagattgtagtcagatgcgcctagcattacttgctaggttggtt
gcacagatggatgcagatgatgatgttgttgtgatggtgcaaaaacatattgtcgtggac
taccaagagcagaagggacatgagcttgtattacacatcttgtatcatctctattcactc
acaaccctagattcagttggaaacacctcttatcctgctgccgtgtatgaaaaatttctc
ttggcagtggccacatctttgctcgattcatttccagcttcagacaaatcttttagcaaa
ctactcggtgaagttccagttttgcctgattctgcattgaaactactaggtgatctctgc
tacgctgatgttactgaccaacatggaaaagatattcgtgatgtggaacgtgttacgcag
ggccttggtgccgtctggagtttgattttgggacgccccctgtataggcaagcttgctta
gatattgctttaaagtgtgctgttcatttacaagatgaaattcgtgcaaaagctattcgc
ctggtggccaacaaactctatcagttgagttatgtagtggaaaatattgagcagtttgca
actagcctgttgcactcagcagtggataaccatgcttcagatttagagcatctgcaatct
gggtccactgtacatagagctacagggatggttggaagccaagatacatcagttagtgat
tctcaaatttcagattctggaaattctgagattgattccacaagggagggtcagcgtgta
gcacatagcacaacaacaatttctattctggatgctcagcgactcgtttctctcttcttt
gctttatgctctaagaaaccaaatcttcttcaacttgtttttaacatttatgaacgagcg
ccaaaaattgtaaagcaggcctttcatcgccatatcccaattctcataagggcactaggt
tcatctaatcctgaattgctctccataatatctgatccaccccaagggagtgagaatctt
ttgatgctagtactgcaaattttgacccaggagacgacaccggctcctgatctgatagct
actgtcaaacatttatatgaaactaaattaaaggatgtaacaattcttatcccaatgtta
tcttcactttctaaaaatgaggttttacctatattccctcggcttgttgctcttccttta
gagaaattccaaatggctcttgcacatatactacagggttcagctcatactggtccagct
ttaacacctgccgaggttttggttgccattcacaacattgctcctgagaaagatagtctc
gcacttaaaaagataacagatgcttgctcagcttgttttgagcagcggacagtatttaca
cagcaagtcttggcaagggccttgagccagatggttgagcagactccactacctcttctc
tttatgagaacagtaattcagtcaattgatgcttttccttcactggttgatttcgttatg
gagatactatccaaacttgtgagcagacaggtctggaaattgccaaaactttgggttggc
ttcttgaaatgtgtatatcagacacagccacattcttttcatgtcttattgcagttaccg
ccaccacaacttgaaagtgctttaaacaagcatgcaaacctcagaagtccccttgctgct
ttcgctagtcagccgaacttgataagttcactgcctagatcaacacttgcagttctgggt
cttgcaaatgaaaggcaaatgcaacaacctcaccgttcatcatcctttaactcttcagat
gcaagttcatcagttcgtggagcaacaccatcatga
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