Cannabis sativa (hemp): 115702295
Help
Entry
115702295 CDS
T08987
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03030
DNA replication
csav03420
Nucleotide excision repair
csav03430
Mismatch repair
csav03440
Homologous recombination
csav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115702295
03420 Nucleotide excision repair
115702295
03430 Mismatch repair
115702295
03440 Homologous recombination
115702295
03460 Fanconi anemia pathway
115702295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csav03000
]
115702295
03032 DNA replication proteins [BR:
csav03032
]
115702295
03400 DNA repair and recombination proteins [BR:
csav03400
]
115702295
Transcription factors [BR:
csav03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115702295
DNA replication proteins [BR:
csav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115702295
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115702295
MMR (mismatch excision repair)
115702295
DSBR (double strand breaks repair)
HR (homologous recombination)
115702295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
DUF223
Fer4_10
zf-CCHC_2
DUF936
Motif
Other DBs
NCBI-GeneID:
115702295
NCBI-ProteinID:
XP_030485603
LinkDB
All DBs
Position
5:complement(18507647..18511786)
Genome browser
AA seq
883 aa
AA seq
DB search
MAVTLTEGAITRICTEEFRKEDNWKPVVQILDLRMVNTQGGQPVPPEKERFRVRLSDGSH
FQQGMLGTQVNDLVRQGRLQKGSLIRLNEFVCTPVQGRLIIIIVDLELVLETCDLIGEPE
LVTRPGISPTSGLVTGNAQSTGVSSFTAGAVNETVVGMSMDNTRMNQSFGSPYSSNFDSG
RYGTNNMPSMYAKSELGDRPYSYQNTGVGEPAPISGSYGNQNLGFRSPRPEVSRPPLNSY
GRTPPVSYQQPPPNSYGRTAQPAYQPPPPMYSNRGPVAKNEAPARIIPISALNPYQGRWT
IKARVTAKGELRHYNNARGDGKVFSFDLLDSEGGEIRATCFNAVADQFYNQIEVGRIYMI
SKGSLKPAQKNFNHLRNDQEIFLESTSTIQPCFEDDNKIPQQQFHFCSISDVEGMENNNI
VDLIGVVSSISPATTLMRKNGTETQKRALHLKDMSGRTVELTLWGGFCNAEGQRLQNMCD
SGVFPVLAVKFGRISDFNGKVVGTISSSQLFIEPDFPEAHSLKEWFDKEGKNAPSVSISR
ELVGSGRTDVRKTISQIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPLMIGDRQCN
KKVTNNGDGKWRCERCDQCIEACDYRYILQLQIQDHTGLTWATAFQEGGDEIMGVSAKDL
YFLKFEDQDEDKFAEIIRKVLFTKFTFKLKIKEETYSDEQRVKSTVMKAEKVCYSSEARV
LLDMLEKLKREDFGSAPKVETFTSNPGLTTPVDLGNMGSAGREYAASANQVGQYGNQYSG
GSRLSAPTSSGSYLSCNSCGATGHSSMNCPSIVNGPGQPLGGGYSNRPSSGQVGNVSGEC
FKCHQTGHWARDCPGSREPPPSYGSSVSGRYGGGFPKQHVGGF
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcacgctgacggaaggtgcgattacgaggatttgtactgaggaattccgcaag
gaagataactggaagccggttgttcaaatcctggacttgaggatggttaacacgcaagga
ggtcaacctgtgcctcccgagaaggaaaggttcagagttcgactctctgatggttcacat
tttcaacaagggatgttagggacacaggtcaatgatcttgtcagacaagggaggttgcag
aagggctctcttattcgattaaatgaatttgtctgcactccggtccaaggccgattgatc
atcatcatagttgatctggagctggtacttgaaacttgtgatctaattggtgaacctgaa
ctggtaacaagacctggaatttcaccaacctcgggattggttactggaaatgctcaatcg
accggtgttagtagttttactgctggggcagtgaatgaaactgtggtcgggatgtctatg
gataacactaggatgaatcaatcatttggcagtccttattctagtaattttgattctgga
aggtatgggacgaataatatgccttccatgtatgctaagtcagagcttggtgataggcca
tatagttatcagaacacaggagttggggagccagcaccaataagtgggtcatatggtaat
cagaacctcggtttccgcagtcctagacctgaggtttcacggcctcctctaaattcttat
ggtcgtacaccgccagtttcatatcaacagccaccaccaaattcttatgggcgcactgca
cagccagcttatcaaccgccacctccaatgtatagtaatagaggaccagtagccaaaaat
gaagcacctgcaaggataataccgatttctgcactcaatccttaccaaggaagatggaca
attaaggctagagtgacagcaaagggagagctcaggcactacaacaatgctcgtggtgat
gggaaggtattttcttttgatcttttggattcagaaggtggagaaatacgggcaacctgc
tttaatgctgtggctgatcagttttacaaccagattgaagttggtagaatatatatgata
tccaagggtagtttaaaacctgctcagaagaatttcaaccatctccgcaatgatcaagag
atttttctggagagcacatcaacaatccagccatgttttgaggatgataataaaattcca
caacagcaatttcatttttgttctataagtgatgtagagggcatggagaacaacaatata
gtggatttaatcggtgttgtgtcctctattagtcctgccaccacattaatgagaaaaaac
ggtacagagactcaaaagagggcacttcatttgaaagacatgtctggccgaactgttgaa
ttaacattgtggggaggtttttgcaatgcagaaggacaaagactgcagaatatgtgtgac
tctggagttttccccgttctggctgtgaaatttggtagaatcagtgatttcaatggcaaa
gttgtggggacaatttcttcaagtcagctatttatagagcctgattttccggaggcccac
agtctgaaggaatggtttgacaaggaagggaagaatgccccatctgtctctatttccaga
gaattagtaggttcaggtagaacagatgtccgaaaaactatatctcagataaaagatgag
aagttagggacttctgagaagccggattggataactgttagtgccactgtttctttcata
aaggttgataatttctgctatacagcatgtcctcttatgattggtgatcgacaatgcaac
aaaaaggtcacaaataatggagacgggaaatggcggtgtgagagatgtgaccagtgtatc
gaagcatgtgactaccggtacatactccagttacaaatacaagatcatactggcttgaca
tgggctactgcgtttcaggagggtggtgatgaaataatgggtgtctctgctaaagattta
tatttcttgaaatttgaagatcaagacgaggacaaatttgctgaaataattcgaaaggtt
ttatttaccaagtttacttttaaattgaaaatcaaagaggaaacatacagtgacgaacaa
cgtgttaaatcaactgtgatgaaagcagaaaaggtgtgttattcttcggaggccagagtt
cttctggatatgttggagaagttgaaaagagaggattttggctctgctccgaaggtagaa
acattcacttctaaccctggattaaccacaccagttgacttaggtaatatggggagtgct
ggtcgagaatatgctgcgtcagcaaatcaagtggggcagtacggtaatcaatatagtggt
ggttctaggctttctgcgcctacatcttctggttcatacttgagctgtaatagttgtggg
gctactggtcatagttctatgaactgcccgagtatagtaaatggtccaggacagcccctt
ggagggggctattctaatagaccatcttctggccaagtgggtaatgtctcaggtgaatgt
tttaaatgccatcaaactgggcattgggctagagattgtccggggtccagagagcctcct
ccatcttatggaagcagtgtttctggaagatacggaggaggattccccaaacaacatgtt
ggtggcttttga
DBGET
integrated database retrieval system
