Cannabis sativa (hemp): 115703071
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Entry
115703071 CDS
T08987
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115703071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115703071
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115703071
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115703071
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
115703071
NCBI-ProteinID:
XP_030486420
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All DBs
Position
X:16365350..16367764
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AA seq
324 aa
AA seq
DB search
MRGTELPLNQTQKVRLQRALDKLESLSSKSNSNASVTVADSIPVNYEDGVLKGHGTSELN
GEVVATVCGIVERVNKLVYVRALRSRYKPEVGDIIVGRVVEVAPKRWRIEINFSQDAVLM
LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLKRGQ
LLTVPPYLVKRRKQHFHNLVDYGIDLILGCNGFIWVGEHVVPADDMVEDQTEQQTLKSDV
TLTSLEEQEQVSTPLEIRQYICRTANAIRVLSTLGFIVTVEVIMEIVDLSCSMNVDIHQM
LGSEFCVLVAEKEVERRTLTKKKR
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaacagagcttccattgaatcaaacccagaaggttcgtttacagagagctctc
gataaacttgagtctctttcttccaagtccaattctaatgcttccgtcacagtcgcagat
tccattcctgttaactacgaagatggcgtactcaagggacatggaacctcagaactcaat
ggtgaggtcgttgcgacagtttgcggtattgtggagcgagtcaataagctggtctacgtt
cgtgctttacggtcccggtacaaaccggaggttggagatatcatagtgggtcgtgttgtt
gaggttgctcccaaacgttggagaatagagattaactttagccaggacgcagttctgatg
ctttcctcaatgaacttacctgatggtatccagaggcggcgtactgccttagatgaactc
aacatgcgcagtatttttgaagagaatgatgtcatttgtgctgaggttcgcggttttcaa
catgatggtttacatctccaagcaagaagtcaaaagtatggaaagcttaaaagaggtcaa
ttgcttacagtacctccttatctagtgaagagaaggaagcaacatttccataatttggta
gactatgggattgacttgattcttggatgtaatggattcatctgggtaggggaacatgtt
gtgcctgcagatgatatggtggaagatcaaaccgaacaacaaaccttgaaatctgatgta
actttgacaagtctcgaagaacaagagcaagtctctacccctcttgagataagacaatac
atttgcaggacagcaaatgcaatccgggttttgtctactctgggttttattgttactgta
gaagttatcatggagatagtagacttgagttgctctatgaatgttgatattcatcaaatg
cttggttcagagttttgtgttttggttgccgagaaagaggttgaacgacgaaccttgacc
aaaaagaagagatga
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