Cannabis sativa (hemp): 115703121
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Entry
115703121 CDS
T08987
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03030
DNA replication
csav03410
Base excision repair
csav03420
Nucleotide excision repair
csav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115703121
03410 Base excision repair
115703121
03420 Nucleotide excision repair
115703121
03430 Mismatch repair
115703121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csav03032
]
115703121
03400 DNA repair and recombination proteins [BR:
csav03400
]
115703121
DNA replication proteins [BR:
csav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
115703121
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
115703121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_22
PTCB-BRCT
AAA_30
Rad17
AAA_19
Gp44_lid
AAA_18
BRCT_2
nSTAND3
AAA_assoc_2
Sigma54_activ_2
RuvB_N
DNAX_ATPase_lid
AAA_5
AAA_14
Zeta_toxin
AAA_16
AAA_17
AAA_24
AAA_28
Motif
Other DBs
NCBI-GeneID:
115703121
NCBI-ProteinID:
XP_060963226
LinkDB
All DBs
Position
X:18815215..18824304
Genome browser
AA seq
1023 aa
AA seq
DB search
MSQSDIRKWFMKSHDKDKGNGDAAAKPAKSAQPPSKASEKSSQVKTQLDKDKQVPVSEEK
DNSGRRKTSKYFAEKEKERVEVPAKRKSQNDGDGYEKPSPAKKVHKGDDDDDDDFVLPDS
KKNSVDATPRKKLKSGSGRGAGQKPAKIDESDDDDDVKDVLPSKSGGRGRGGRGASATSS
GGRGAGQKPANVVESDGDDDDIKDVVTPSKSAGRGRGGRGASATPSGGRGRGAGRGGFMN
FGERKDPPNKGQKEVPEGTPDCLTGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKK
TNYLLCDEDIGGRKSEKAKELGTAFLTEDGLFDKIRASYKSKAPQQESKKSVNNAAGLSP
KKIVQKTEIKKECLSTPPSENVAKKGLTSAVSLDKKRVQTTQHSALTWTEKYKPKLPNDI
IGNQSLVKQLHEWLLRWHDQFLDTGSKKKGKKASDSGAKKAVLLSGTPGIGKTTSAKLVS
QMLGFQMIEVNASDSRGKADAKIEKGIGGSNANSIKELVSNEALSDNMDWSKHPKTVLIM
DEVDGMSAGDRGGIADLISSIKMSKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQM
AKRLMQIAKTEGLQVNEIALEELAERANGDMRMAINQLHYMSLSMSVIKYDDVRQRLLMS
AKDEDISPFTAVDKLFGFNSGKLRMDEKMDFSMSDPDLVPLIIQENYLNYRPSSVSKDND
GIKRMNLIARAAESIGDGDIFNVQIRKYRQWQLSQNCALSSSIIPSAFLHGQRETFEQGE
RNFNRFGGWLGKNSTRGKNLRLMEDLHVHILASRESNFGRETVRIECLTLLLKRLTEPLR
VLPKDEAVREVVDFMNTYSISQEDFDTIVELSKFKGYPDPLEGIPPAVKSALTRAYKEGS
KSRMVRVADFVTLPGIKKAPKKRVAAMLEPSDNGVGEINEEVIAESDEEKSSDTEDLDDS
AVGEKLQKELQSLNRNGVQVQLDLKDSGKSSAKKTPASRGKGGSGTAEKKGARGSGSGAK
RKR
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagtcagatattaggaagtggtttatgaagtcgcatgacaaggacaagggaaat
ggcgatgcggcagccaagccagcgaaatctgctcaacctccttctaaggcttctgagaaa
tcttctcaggttaaaacccagctagacaaggacaagcaggtgccggtgagtgaagagaaa
gataattcggggcggagaaagactagtaagtatttcgctgagaaagaaaaagagagagtt
gaggttccagccaaaagaaagtctcaaaatgatggcgatggctatgagaaaccctcgcct
gcaaaaaaagttcataaaggcgacgacgacgatgacgacgactttgtattgcccgactct
aagaaaaactcagttgatgccaccccaagaaagaaactaaagagtggatctggaagggga
gctggacaaaagcctgcgaaaattgatgaaagcgatgatgacgatgatgtgaaagacgta
ctaccatcaaaatctggtggaagaggccgtggtgggagaggtgcctcggcaacatcatct
ggtggaaggggagctggacagaagcctgcaaatgttgttgaaagtgatggtgatgatgat
gatattaaagatgtagtaaccccttctaaatctgccggaagaggccgtggtggaagaggt
gcctctgcaacaccctctggtggaagaggcagaggtgctggacggggtggctttatgaac
tttggagaaagaaaagatcctccaaacaaggggcaaaaggaagttcctgaaggtactcca
gattgtttaactggtttaacatttgtaattagtggcacacttgacagtttggaaagagaa
gaagcagaagacttgatcaaacgccatggtggccgtgttacaggatccgtcagcaagaaa
acgaattatcttctatgtgatgaagatattgggggaagaaaatctgaaaaagctaaagag
cttggtacggcatttctgactgaagatggattgtttgataagatacgtgcatcatataaa
tctaaggcacctcaacaagagtcaaagaaatctgtgaataatgctgccggtttgtcaccg
aagaaaatcgtgcagaaaacagaaataaaaaaagaatgccttagcacccctccatcagaa
aatgtagccaagaaaggcttgacctcagctgtctccctcgataagaaaagagttcaaact
actcagcattctgcattgacttggactgagaaatataagcccaagcttccaaatgacatc
attggaaatcagtcattggtcaaacaacttcatgagtggttgttacgttggcatgatcag
tttcttgatactggaagtaagaaaaaggggaaaaaggcaagtgattctggtgcaaagaag
gcagtactattaagtggaacgcctggcatagggaaaacaacatcagcaaagttggtcagt
cagatgcttggcttccagatgattgaggtaaatgctagcgacagtcgtgggaaagctgat
gccaagattgaaaaagggattggtggaagcaatgcaaattctataaaagagctcgtcagc
aatgaggccttaagtgataacatggattggtcaaagcatccgaaaactgtgctcattatg
gatgaagtggatggaatgtctgctggagataggggtggaattgctgatcttatttctagc
atcaagatgtcaaagatccctattatctgtatatgtaatgaccgctacagtcagaaactg
aaaagtcttgtgaactactgtcttcttctgagctttcgcaaacctactaaacaacagatg
gcaaagaggttaatgcaaattgcaaagactgaaggtcttcaggttaatgagattgctcta
gaggaacttgctgaacgggctaatggagacatgcgaatggcaataaatcagttgcattat
atgagcctctcaatgtcagtaataaagtatgatgatgtgaggcaacgcttgcttatgagt
gcaaaggacgaagatatttctccatttacagctgttgataagctgtttggttttaattca
ggaaagttgaggatggacgagaagatggattttagcatgagtgatcctgatctagttcct
cttataattcaggaaaattatcttaattacagaccaagttctgttagtaaagataacgat
ggtataaagcgtatgaacttaattgcacgcgctgctgagtctattggtgatggagatatt
ttcaatgtacagattagaaaatatcgtcaatggcagctatctcaaaattgcgctctttca
tcctctataattccttctgctttcttacatggacaaagggagacgtttgagcagggggaa
aggaacttcaacagatttggtggttggttgggaaagaactcaacacgaggaaaaaatctg
agacttatggaggatttgcacgttcatattcttgcttctcgtgaatcgaatttcggaagg
gaaactgtgcgtattgaatgccttactctacttttgaaacgattgactgagccactcagg
gtgctgcctaaggatgaagctgtccgggaagtagtggatttcatgaatacctactctatt
agtcaggaagactttgatactattgtcgagttatccaagtttaaggggtacccagatcca
ctggaggggataccgcctgcagttaaatcagctcttacaagagcatacaaagaaggaagc
aagtcacggatggtacgagttgcagattttgtcacacttcctggaattaaaaaggcccct
aaaaaacgggttgctgcaatgctggaaccatctgataatggggttggagaaatcaatgaa
gaagtgattgcggaaagtgatgaagaaaaatcttcagatacagaggacttggatgattcc
gctgttggtgaaaagctgcagaaggagcttcaaagtttaaacaggaatggagtccaagta
caactggatttgaaagactcaggaaagtcaagtgccaagaaaacaccagcaagcagagga
aaaggtggttctggaaccgcagagaaaaaaggcgcacggggttcagggtctggtgccaag
agaaagagatga
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