KEGG   Cannabis sativa (hemp): 115703950
Entry
115703950         CDS       T08987                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115703950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csav03021]
    115703950
Enzymes [BR:csav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     115703950
Transcription machinery [BR:csav03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     115703950
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 115703950
NCBI-ProteinID: XP_060964558
LinkDB
Position
1:complement(52993565..53007999)
AA seq 2085 aa
MEEAAEFSDISDGEIIGIKFSLASHKEICTASVSGSSITHASQLTNPYLGLPLEFGRCES
CGTSEAGSCEGHFGYIELPVAIYHPSHVSELRRMLNLLCLKCLKVKKNKSPAKNVGIAEQ
LLGSCCPEATQVSVNDIYKDGYWYLQLKVPSKKRVPDGFWKFLERYGYRYGGSLTEDLPK
RTLLPDEVLEIIKRLPSETIKKLESKHFFPQSGYILKFLPVPPNCLSVPEISDGITIMST
DPSMAMLKKVLRQVEIIKSSRSIPNFESTEVEANELQIAVDQYLQARGTVKASRGIDERF
GVNKEAKSSSTKVWLEKMRTLFIRKGSGFSSRTVITGDAYKEVNEVGIPYDIAKGITFEE
RVNDHNINYLQNLVDNNLCLTFIDGSTRFSLKEGSKGHTFLRTGQVVHRRIMDGDIVFIN
RPPTTHKHSLQALKVYVHDDHIVKINPLICGPLSADFDGDCIHLFYPQSLAARAEVVELF
SVEKQLLSSHSGNLILQLASDSLLSLKMLFETYFMDKVSAQQLAMFSSSSLPQPALWKKA
PFLDPHWTALQVLQSALPASFDCSGDRFLVKGSEILILDFNRDVISSVISDIVTSIFFKK
GSEEVLKFFNSVQPLLMENIFEHGFSVGLEDFSISLEAITNIQKDIQAISPLLFHLRSKY
NELVELNLENEIRSIKASVTNFFLNSSALGDLIDTKSDSAVNKVVQQIGFLGVQMSDRGK
FYSKTLFEDVSDLYSRIYPPNVDYPSAEHGLIRSCFFYGLDPYEEMVHSISTREILVRSS
RGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGTKAQNLYPAGEPVGVLAA
TAMSNPAYKAVLDSSPSSNNSWEMMKEILLCKVSFGNEPTDRRVILYLNDCYCGRNYCQE
NAAYLVKNQLGKVSLKDTAVEFMIEYRNQDPSGGCEVNAGLVGHIHLNESMLKRMNIGIN
EILEKCQENINSLRRKKIRQHLKTALLSVSECCSFHKSPDETSEVPCLLISLKEDMSLTL
EESSQILADSVCPFLLGTVIKGDSRICSANITWISPEATTWIRHPHISERRGELALDVVL
EKSAVKQSGDAWRIVLDSCLPVLHLIDTKRSIPYGIKQIQKLLGISCAFDQAIQRLSTSV
SKVSKGVLKEHLILLANSMTCPGNLIGFNSGGYKALSRSFNIQVPFTEATLTTPKRCFER
AAEKCHTDSLTSIVASCSWAKHVAVGTGSRFDILWDTREMGLNQEETNNVYDFLGVVGAA
SGKETTTGCLGEEIEEIILEDDGEVCASPELEFDQDKPVFEDGDEFKDIPDDDWGFKATQ
ETNNDDWGFKATQETNNDDWGFKATQETNNDDWGSKATQDTDNGGWGKVSSGKEDSSNSG
WNSKSAEKNVATESTWGAASSAWDNVSTKETTASEDDNSNSSGWGAKSSGMKTTESPWGK
STSRVEVDSDNTSGGWNVKSSESKTIESSKMKTTESAWGNNASRGEIDSGSNSGGWNVKL
SGSKTTESAWGKDKAGAEVMSGDDRFKSGRGTWSGGNKRNSENEDVPSRKPNDNSWDSSS
AEHAGGWNANSFGANSTKSVWGTDKASVEAVLEDDRPKSACNAWSSGTKTTETESEDVPS
KKPNDSGWGSSPKQIAETSDAWLSPSVGGSAEKQPSQWGKQGGESFKEGGAGGWGSDEKQ
PSQWRGSNEKQPSQWGKQGGKSFKKGSAGPAGDWGSNEKQPGQWGKRGGESFKKGSSGGW
GSDEKQPTDENQHSQWGGNDEKQSSQWGTKGGESFKKGSSGGWGSDEKQPIDETQPSQWG
GSDEKQPSQWGGSDEKQPSQWGGSDEKQPSQWGGSDEKQPNQWGGSDEKQPNQWGGSDEK
QPNQWGKQGGESFRKGGWGSDEGWKIKKNRPNKPWGNENSTVIVQRTATGQRLDLFTTEE
QDPLSLVEPIMLAIRRIMHKDGYNDGDPLASEDQTYIVDNVFANHPDKDSKMGCGIDYIM
VSKHFRFQDTRCFYVVLTDGHKEDFSYRKCLENLVKSKYPDISEAFNGKYFRKPGGNRDR
QTTPEQQSTPEQFSTPEQNNSSEQFSTPEQNSTQEQQQSEVEKAQ
NT seq 6258 nt   +upstreamnt  +downstreamnt
atggaggaagccgccgagttctcagatatttctgatggagagattattggtatcaaattt
agtttggcaagtcacaaggaaatttgtacagcatctgttagtgggtcctctattactcat
gccagtcagcttacaaatccctaccttggccttcctcttgaatttggaagatgtgagtcg
tgtggcacttctgaagctggaagttgtgaaggtcattttggatatatcgagttgccagta
gcgatatatcatcccagccatgttagtgaattgaggcgtatgttgaatttattgtgcttg
aagtgcttaaaagtgaaaaagaacaagtctcctgcgaagaatgttggtattgccgagcag
ctattgggttcgtgttgtccggaagccacacaagtctcagtcaatgacatatataaagat
ggatattggtacttacaattgaaggtaccatctaagaaaagagttcccgatgggttttgg
aaatttttagaaagatatggttatcggtacgggggttctcttactgaggatcttccaaaa
cgcactttgctccctgacgaggtactcgaaataatcaagagacttcctagtgaaacaata
aagaagcttgagagcaaacactttttccctcaatctggctacatcctcaagttcttacct
gttccaccaaactgtttatcggtaccagaaatttctgatggcatcactataatgtcaacg
gatccttcaatggcgatgctaaaaaaggttctaaggcaagtggaaatcattaaaagttca
agaagtataccgaactttgaatccactgaagttgaagccaatgagttgcagatagcagtt
gatcagtatcttcaagctcggggtactgtgaaggcgtcccgtggcattgatgagcgtttt
ggtgtcaacaaagaagccaagagctcttcaaccaaagtatggctagaaaagatgaggacc
ttgtttatcagaaagggttcaggcttctcctctagaactgtaataactggtgatgcttat
aaagaggtcaacgaggttggtatcccttatgatatcgccaaaggaataactttcgaagag
agggttaatgatcacaacattaattatttacaaaatcttgtagataataacttgtgctta
acctttatagatggttcaactagattttccttgaaggagggatctaaggggcatactttc
ctaagaactggtcaggttgtacatagaaggataatggatggggatatagttttcatcaac
cggcctcctactacacataagcactcgcttcaagcactgaaagtatatgttcatgatgat
catatagtaaagataaaccctcttatttgtggaccattgagtgctgattttgacggagat
tgtattcacttgttctatccccagtctcttgcagcaagagcagaagttgtggagcttttt
tctgtagagaagcagcttcttagctcacatagtggcaaccttatcttgcagttggccagt
gactctttgctgtcattgaagatgttgtttgagacatattttatggacaaggtatcagca
caacaattggccatgttttcctcatcttctttgccacaacctgctctttggaagaaggct
ccttttttggacccacattggactgcattgcaagttctacaatctgctttacctgcttca
tttgattgctcaggggacagattcttggttaaaggaagtgaaatactaatcttggatttc
aacagagatgtaatctcttcagtcattagtgacattgtgacctcgattttctttaagaaa
ggttctgaagaggttttgaagttcttcaattctgtacagcctttgctgatggagaacatt
tttgaacatggttttagtgtggggttggaagatttttccatttctttggaggccattaca
aatatccagaaggatattcaggctatttctcctctgctgttccaccttagatcaaagtat
aatgagctggtggagttgaatttggagaatgaaattcggtctatcaaagcttctgtcacg
aacttttttctgaattcgtcagctctgggagatttgatcgacaccaagagcgattctgca
gttaacaaagttgttcaacaaattgggtttttaggagtgcagatgtctgacaggggaaaa
ttctactccaagactttgttcgaggatgtttccgatctatatagtaggatatatcctcca
aacgttgattacccttctgcagagcatggccttattaggagctgttttttctatggttta
gatccatatgaagagatggtccattcaatatctactagagaaatacttgttcggtcatca
agaggattaacagaacctggaactttgttcaagaatttaatggctattcttcgagatgtt
gtcatatgttatgatggcactgttaggaatgtttgtagtaactcaatcattcaatttgaa
tatggaacaaaggctcaaaatttatatcctgctggtgaacctgttggtgtgttagctgca
actgccatgtcaaatcctgcttataaagcagttctcgattccagtccaagtagcaataac
tcatgggagatgatgaaggaaatactgctgtgtaaggtcagttttggaaatgagcctact
gatcgtcgtgtaatcttgtatttgaatgactgctattgtgggagaaattactgccaagaa
aatgctgcttatctggtgaagaatcaactgggaaaagtcagcctcaaagatactgcagtg
gagttcatgattgaatataggaaccaggatccctctggtgggtgtgaagtgaatgcaggt
ctagttggtcatattcatctcaatgagtcgatgttgaaaaggatgaatattggtatcaat
gaaatacttgaaaaatgccaagagaatattaattcattacggaggaagaaaattcggcaa
catttaaagacagcattgttatctgtcagtgaatgttgctctttccacaagtctccagat
gaaacatctgaagtcccgtgcttattgatttccttgaaggaagatatgagtcttactttg
gaggaatcttcacagattcttgctgattctgtatgtccatttcttttaggaacggttatc
aaaggtgactcccggatttgctcggcaaatataacttggattagtcctgaggcaacaact
tggataagacatccgcacatttctgagaggaggggtgaattggctctggatgttgttttg
gagaagtcagcagtcaagcaaagcggtgatgcatggaggatagtccttgactcttgcctc
cctgtactccatttgatagataccaagcgatccatcccatatggaattaaacaaatccag
aaattgctgggaatttcttgtgcttttgatcaagcaattcagcgcctttcgacatcagta
tcaaaggtgagcaagggtgttctcaaggagcatctcatcctcttggctaacagtatgacg
tgtcctggaaatttgattggcttcaattctggtggctacaaggctctatctcggtcattt
aatatccaagtcccattcactgaagcgacactaacgacaccaaaaagatgctttgagcgt
gcagctgaaaaatgtcatactgattcattgacaagcattgttgcttcatgttcatgggcg
aaacatgttgctgttggtactggctcgaggtttgatatcctctgggacacaagagagatg
ggattaaatcaagaggagacaaacaatgtatatgactttcttggtgttgtgggtgctgca
tctggaaaagaaacaactactgggtgtctcggtgaagaaatcgaggagattatactggaa
gatgacggtgaagtttgtgcatcacctgagctcgagttcgaccaagacaagccagtcttt
gaagatggtgatgaatttaaagatattccagatgatgattggggtttcaaagctactcag
gaaaccaataacgatgattggggtttcaaagctactcaggaaaccaataatgatgattgg
ggtttcaaagctactcaggaaaccaataatgatgattggggttccaaagcaactcaggat
actgataatggaggatggggcaaggtatcatctggtaaagaagatagctccaatagtggg
tggaattccaagtcggctgaaaagaatgttgcaactgaatccacctggggagccgccagt
tcagcttgggacaatgtttcaacaaaggaaacaactgcttcagaagatgacaactccaat
tctagtgggtggggtgcaaagtcttctggaatgaaaacaacagaatctccatggggcaaa
agcacatctagggttgaagttgattcagacaatacttctggtgggtggaatgtcaagtcg
tctgagtcgaagacaattgaatcctctaaaatgaaaacaacagaatctgcatggggcaac
aatgcatctaggggtgaaattgattcaggctccaactctggtgggtggaatgtcaagttg
tctggatcaaagacaactgaatctgcatggggaaaagataaagcaggggctgaagttatg
tccggagatgaccgcttcaaatctgggcggggtacttggtcaggagggaataaacgaaat
tctgagaatgaagatgttccctctagaaaacccaatgacaacagttgggattcctcatca
gcagagcatgctggtgggtggaatgccaattcttttggagcaaactcaacaaaatctgtg
tggggaaccgataaagcaagtgttgaagctgtgctagaagatgaccgccccaaatctgca
tgtaatgcttggtcttctgggacaaagactacagaaactgagagtgaagatgttccctct
aaaaaacccaatgacagcggctggggttcatcaccaaagcaaattgcagaaacttcagat
gcttggctgtcaccgagtgttggaggcagtgctgaaaaacaacccagtcaatggggaaaa
caaggtggggaatctttcaaggaaggtggcgctgggggttggggttcggatgaaaaacaa
cccagtcaatggagaggcagtaacgaaaaacaacccagtcaatggggaaagcaaggtggg
aaatcattcaagaaaggcagtgccggccctgccggggattggggttcaaatgaaaaacaa
cccggtcaatggggaaagcgaggcggggaatctttcaagaaaggcagctctgggggttgg
ggttcagatgaaaaacaacccactgatgaaaatcaacatagtcaatggggaggcaatgac
gaaaaacaatccagtcaatggggaacgaaaggtggggagtcattcaagaaaggcagctct
ggaggttggggttcagatgaaaaacaacccattgatgaaacacaacctagccaatgggga
ggcagtgatgaaaagcaacctagccaatggggaggcagtgatgaaaagcaacctagccaa
tggggaggcagtgatgaaaaacaacctagccagtggggaggcagtgatgaaaaacagccc
aatcaatggggaggcagtgatgaaaaacagcccaatcaatggggaggcagtgatgaaaaa
caacccaatcaatggggaaagcaaggtggggagtcattcaggaaaggtggatggggctca
gatgaaggatggaagataaagaagaaccgtccaaataaaccttggggtaatgaaaactca
accgtaattgtacaaagaactgcaacaggacaaagattagatcttttcacaactgaggaa
caagatcccctctctcttgtggaaccgatcatgcttgccatcagaaggatcatgcataag
gacgggtacaatgatggcgatccactggcatctgaagatcaaacgtatatagttgacaat
gtctttgctaatcacccggataaagacagcaaaatgggttgtggaatcgattacatcatg
gtgagcaagcatttccgtttccaggacaccaggtgcttttatgttgtcttaaccgatgga
cataaagaagatttttcgtaccggaaatgcctcgaaaacttagttaagagcaagtatcca
gacatctcagaagcttttaatggaaagtattttcgaaaacctggagggaaccgggaccgg
caaaccacccctgaacaacaatctaccccagaacagttttctaccccggaacagaacaat
tcctcggaacagttttctaccccagaacagaactctacccaagaacagcagcaatctgag
gttgagaaggcacagtag

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