Cannabis sativa (hemp): 115705141
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Entry
115705141 CDS
T08987
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115705141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115705141
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115705141
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
115705141
NCBI-ProteinID:
XP_030488239
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All DBs
Position
1:complement(56441687..56447799)
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AA seq
1260 aa
AA seq
DB search
MVSKKHLYGSHHPYNDQPFEALCCGSWKTLKSIRISNGTMRLNFMDHGCTLQEKGPFTNL
RIKSRQATLSDCTCFLRPGVDICVLSTLHSQHTQNLDDEGQDPVWIDARISSIERKPHES
GCSCKFYINFYTNQGSLGSMTETLNKEINLVEIDKIFILQKLGQNFCEDQYYRWDFSEDC
STRQKTKMLLGKILFDLSWLLVTSSVKNLSFDVRSVQNKIVYQILGAVEESSSSSSHSTL
HAANFKVDNGISVPIVVQFAEHDSIREEPTPILDKIEAEPSPFSDSMGLRRSKRRNVQPE
RFLGCDSGSEIDIGYVRTRPYKVDRGEDIELSMPLSLLFGVNGLRSKVRTKDKYISHPCK
RDFYGNPIECESKTSSRKVKQSVTNHKEHQHKPDVSFTEKEIASLSFDYQFQVKNPQNRA
KMLDEIPPQRYYNNNYSKVQKKNISDLEELELESTFERRPVARSVQRKRFRHYTRYTGAN
GERTYQKRSLHAGAYTELINSFLRNIDCTGKEEPPITDQWKEHKTTNFENEMPPDEDEEE
MSETELLWKEMELALASTYVLDDDEDPNVRWTNARDKFSNLECEHDYKVDEEVGILCSLC
GYVFTEIRDILPPFMQNTGWSAADKKFSEDDLEHGAAEESEMEFLCPQGCPDKPLSEEKE
NVWALIPEIQRKLHDHQKKAFEFLWKNIAGSLTPDLMKQKSSKLGGCVISHSPGAGKTFL
MIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFKSKTVN
FPGAPRPTDDVRHILDCLEKIQKWHAQPSVLVMGYTSFLALMREDSKFAHRKFMAKVLRE
SPGILVLDEGHNPRSTKSRLRKALMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVN
EVLKVLDPKYKRKKKKLVEKARNLQEARARKYFLDNIAKKIDSSEEKERMQGLKMLRKIT
TKFIDVYEGGGSADTLPGLQIYTLLMNSTDKQHEILVRLHQIMSTYHGYPLELELMITLG
SIHPWLIKTAVCANKFFSEEELEDLEKYKFDLKKGSKVKFVLNLVYRVVKKEKILLFCHN
IAPVKLFLELFERVFGWQRGKEVLVLTGDLELFERGRVMDKFEEPAGESKVLLASITACA
EGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLATGTLEEDKYRRTTW
KEWVSSMIFSEALVEDPSKWQAEKLEDDILREMVEEDRTKSFHMIMKNEKASTVIRGKED
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcaaaaaaacatttatatggatcgcaccatccatataatgatcaaccatttgag
gctctctgttgtggctcatggaaaactctgaagagtatacgcattagcaatgggactatg
cgtttgaattttatggatcatggatgtactcttcaggagaagggaccctttacgaacctt
cgaataaagtcgaggcaagctacattatctgattgcacttgctttctaagacctggtgtt
gatatatgtgtgctttcaaccttgcattcccaacatacacagaatttggatgatgaagga
caagatcctgtttggattgatgctagaataagctccatagagagaaagcctcacgaatct
ggatgctcgtgcaaattttacatcaacttctatactaaccaaggttctctgggttcgatg
acagaaacacttaataaagagattaatttagtagaaattgataaaatatttatccttcaa
aagcttggtcaaaacttttgtgaggatcagtactacagatgggatttctcagaggattgc
tctactcggcagaagaccaaaatgcttttagggaaaatcttatttgatctttcatggtta
cttgttacctcttctgtaaagaatctatcatttgatgtaagatcagtgcaaaacaaaatt
gtatatcaaattttgggagctgttgaggagagcagttcttcaagttctcatagtactcta
catgctgcaaactttaaagtagataatggtatttcagtccctattgttgttcaatttgct
gaacatgattctatcagagaagagcctactccaatacttgacaaaattgaagctgaacca
tcaccattttctgattctatgggcttacgccgttccaaacgtcgcaatgttcaacctgag
cgtttccttggctgtgacagtgggtcagagatagatattggctatgttcggacaaggcca
tacaaggttgatagaggggaagatattgaattgtcaatgccattgtcgctccttttcggt
gtaaatggccttcgttcaaaagtacgtacaaaagataaatacataagtcatccttgtaaa
cgagatttctatggtaatccaattgaatgtgaaagtaagacctcttcaaggaaggtaaaa
caaagtgtgactaatcataaagaacatcaacacaaaccagatgtttctttcaccgaaaaa
gaaattgcttcactgtcctttgactatcaattccaagtcaagaatcctcaaaaccgtgca
aagatgcttgatgagattcctccccagcgttactacaataacaattactccaaagtacag
aaaaagaatatttctgatctagaagagttggagcttgaaagtacatttgaaagaagacca
gttgctagaagcgttcagcgaaaaagatttcggcattatacgcgatacactggtgccaat
ggagaaagaacctatcaaaagagatctctccatgctggagcatatacagaactaataaac
tcattcttgagaaacattgactgtacaggcaaggaagagccaccgatcactgaccaatgg
aaagaacataaaacaaccaactttgagaatgaaatgccgccagatgaggatgaggaagaa
atgtcagagactgaactgttgtggaaagaaatggaactagccttggcatcgacttatgtt
cttgatgacgatgaggatccaaatgtccgctggacaaatgcaagggacaagttttcaaac
ttagaatgtgaacacgattacaaagtggatgaagaagttggtattttgtgcagtttatgc
ggttatgttttcacagagattagagatattttgccaccctttatgcaaaacactggttgg
agtgcagctgataagaagttcagtgaagatgatttagagcatggtgcagctgaagaatct
gagatggaatttctatgtcctcagggttgtcctgacaaacctctatcggaagaaaaggag
aatgtgtgggccttaattcctgaaattcaaaggaagttacacgatcatcagaaaaaggct
tttgagtttctatggaaaaatattgcaggatctttaacgccggatttgatgaaacaaaaa
tccagtaagttgggtggttgtgtcatctctcattctcctggcgctgggaaaacttttctt
atgatagcattccttgtcagctacctaaagttattcccgggtaaaaggcctttgatcctt
gctccaaagacaacgctctatacctggtacaaagaatttattaagtggaaaattcctata
ccggtttatctaatccatggtcggagaacctatagagtgttcaagtcaaaaactgtgaac
tttcctggagctccaaggccaactgatgatgtcagacatattttggattgcttagagaag
atccagaagtggcatgcacagcctagtgttcttgtaatgggttatacttcctttcttgca
ttgatgcgtgaagactctaaatttgcacataggaaatttatggctaaagttttgagggaa
agtccaggaatcttggttctagatgaaggacataaccccagaagtaccaaatcaaggttg
aggaaggccttaatgaaagttgaaacggacctaagaatattgctttcaggtacattgttc
cagaacaacttctgcgaatatttcaacactttatgtttggcaagaccaaagtttgtcaat
gaagtgttgaaggtattagacccaaaatacaaaaggaaaaagaagaaactagtggaaaag
gcacggaatttgcaggaagcacgagcaaggaagtacttcttggataatattgcaaagaaa
atcgattcaagtgaagaaaaagagaggatgcaggggcttaaaatgttgagaaaaattacc
actaaattcatagatgtgtatgaaggtggaggatctgctgacacacttcctggcctacaa
atttacaccttgctgatgaactcaactgataagcagcatgagattttggtgagactgcat
cagattatgtccacataccatggctatcccctagaactggagcttatgattactcttgga
tctatacatccttggttaatcaaaactgcagtctgtgctaataaatttttcagtgaggaa
gaactggaggatcttgagaagtacaagtttgacttaaagaaaggatcaaaagtgaaattt
gttctgaaccttgtttatcgtgttgtgaagaaggagaaaattctgctcttctgtcacaac
attgcaccagtgaaactgtttttagagttgtttgaacgagtatttggttggcaaaggggc
aaggaagtcttagtcttaactggagaccttgaattgttcgagcgaggaagagtgatggat
aaatttgaggagccagcaggggagtcaaaggtcctgcttgcttcgattacagcctgtgct
gaaggaatcagtttgacagcagcttctcgggttatcatgcttgactcagagtggaatcca
tccaagacaaagcaggctatagcaagagcttttcggcctggacagcaaaaggtggtctat
gtgtaccaactcctggccacaggtacattggaagaagacaagtacagaagaacaacatgg
aaagaatgggtttcgagtatgattttcagtgaggctcttgtggaggacccttcaaagtgg
caagctgaaaagcttgaagacgacatactgagagagatggtggaggaagacaggacgaaa
tcgttccacatgataatgaaaaacgagaaggcttccaccgttatcagaggtaaagaagac
taa
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