Cannabis sativa (hemp): 115705238
Help
Entry
115705238 CDS
T08987
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115705238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115705238
Spliceosome [BR:
csav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115705238
Complex C
U5 SnRNP specific factors
115705238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
115705238
NCBI-ProteinID:
XP_030488376
UniProt:
A0AB40E7H0
LinkDB
All DBs
Position
1:46765683..46777034
Genome browser
AA seq
2345 aa
AA seq
DB search
MWNSGQIVPPGTGGSAIPPPPAAQPSYTVLPSPAEAEAKLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHRPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAFY
YDPLIHPIPSTNKREKKVYDDEDEDDLILPEGVEPLLKDTQLYTDTTAAGVSLLFAPRPF
NMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKH
LFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLT
TKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGM
YRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERW
LGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQ
HLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTV
CRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFTPIPFPPLS
YKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAF
KEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLL
VYKWCQGINNLQDVWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTA
KNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEF
ITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNK
KCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCG
FEIRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMS
SGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSR
FPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYR
YIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTL
AYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLF
KGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVG
FQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQ
KETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRWGD
YDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLIQQAM
NKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTI
HKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVR
SLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKAT
EPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEAHHIWPS
LTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIE
KQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVNHI
YVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQ
WGTHQQVHLPSMLPEHDFLTDLEPLGWMHTQPNELPQLSPQDLTSHAKVLENNKQWDGEK
CIILTCSFTPGSCSLTAYKLTPSGYEWGRINKDTGSNPHGYLPTHYEKVQMLLSDRFLGF
YMVPDTGPWNYNFMGVKHTPSMKFGVKLGTPREYYHEDHRPTHFLEFSNLEEGDIAEGDR
EDTFS
NT seq
7038 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcggccagattgtgccgccgggcacgggaggctcggccattccgccgcct
cccgctgcccaaccctcttatacggtcttgccatctccggcagaagctgaggctaagctc
gaagagaaagccaggaaatggcagcagcttaattctaaacgatatagcgataagaggaag
tttggattcgttgagacgcagaaggaggatatgcctcccgagcacgttaggaagatcatt
agagatcatggggacatgtcgtccaaaaaatatcgtcatgataagcgagtatatcttgga
gcactcaaatttattcctcacgcagtttataagctccttgaaaatatgccaatgccttgg
gagcaggtcagagatgtgaaagttttgtaccatataactggggcaatcacgtttgtgaat
gaaattccatgggttgttgaacccatatatctggctcagtggggttcaatgtggatcatg
atgagaagggagaaaagagaccgtaggcatttcaagagaatgcggtttccaccatttgat
gatgaggagcctcctctagattatgcagataatttactggatgtagatcctcttgagcca
attcagctagaactagatgaagaagaagattctgctgtatatacttggttttacgaccat
aggcctcttgttaaaacaaaactcataaatggtcctagctataggaagtggcatctttct
cttccaatcatggcaactcttcatcggcttgcaggacaactactttcagatctaattgac
cgcaattatttctacttgtttgacatggagtctttcttcacagccaaagcattgaatatg
tgcatacctggtggcccaaaatttgagcccttgtaccgtgatatggaaaaaggtgatgaa
gactggaatgagttcaatgacattaacaaactcattatccggtcacctctcaggacagag
tacagaattgcattccctcacctatataacaacaggcccaggaaggtaaagcttggggtt
tatcacactcccatggttatgtacataaaaactgaggatcctgatttacctgcattttac
tatgatcctttgatacacccaatacccagcactaacaagcgagaaaagaaagtgtacgat
gatgaggatgaagatgatcttattttgccagaaggggtggagcccttactgaaagatact
cagctttatactgacaccacagctgcaggcgtttcccttctttttgctccacgacctttt
aacatgagatctggtaggacgcgtcgggcagaagatatacctcttgtatcagagtggtat
aaagagcattgccccccatcatatccagttaaagtacgggtcagttaccaaaagttgtta
aaatgttttgtgttgaatgagttgcatcatagaccacccaaggcccaaaagaagaagcat
ttgtttcgctctctgcaagctacaaagtttttccaaaccaccgaacttgactgggctgaa
gcaggtcttcaagtttgtaagcaagggtataacatgctgaatcttttgatacacaggaaa
aacttgaattatcttcatcttgattataatttcaatctaaagcctgtcaaaactctgaca
accaaagaacgtaagaagtcacgatttggcaatgctttccatctttgtcgtgaaattcta
cggttgacaaagcttgtagttgatgctaatattcagtttcggttgggtaacgttgacgcc
ttccaattggctgatggcctgcagtacacattttctcatgttggtcagttaactggtatg
taccggtacaagtacaggttgatgcgacaaattagaatgtgcaaagacttaaagcactta
atatactaccggttcaatactgggccagtggggaaagggcctggatgtggattttgggca
ccaatgtggagggtgtggctgtttttccttcgtggtatagtacctcttttggaacggtgg
ttagggaatttacttgcacgacaatttgaagggcgtcactcaaagggggtggctaaaact
gtaactaagcagcgtgtcgaaagtcattttgatttggagcttcgagctgctgtcatgcat
gatgttcttgatgccatgccagagggaataaaacaaaataaagcgagaactatattgcaa
catctgagtgaggcttggcgttgttggaaggcaaatattccttggaaggttcctggtttg
ccggttccaattgagaatatgattcttcgttatgtgaagtcaaaggcagactggtggaca
aacgttgctcattacaatcgtgaacgtataagaagaggtgcaacagttgataagacagtc
tgcagaaagaatctaggaagattgactcgcctttggctaaaggctgagcaggaacggcaa
cacaattatttgaaggatggtccttatgtcacacccgaagaagctgttgccatttatact
acaactgtgcattggttggaatcaagaaagttcactcccattccattccctccattgtcg
tacaagcatgacacaaagctacttattcttgctctggagaggttaaaggaatcgtatagt
gtggctgttagattaaaccaacttcaaagagaagaacttggtctcattgaacaagcatat
gacaacccacatgaagcattatcacgaattaagcgtcatttgcttactcaacgtgccttc
aaagaagttggaattgagttcatggatttatacagttatcttattccagtgtatgagatc
gagccacttgaaaagattacagatgcatatcttgaccagtatttatggtatgaaggtgat
aagcgccacctcttcccgaactggattaagcctgcagattcagagcctcccccgcttctg
gtttacaaatggtgtcaaggcatcaacaacttgcaagatgtatgggacacaggtgatggg
cagtgcgtggtgatgcttcagacaaagtttgagaaattctttgagaagattgacttgact
atgttgaataggcttctacgattggttcttgatcacaatattgctgattatgtcactgct
aaaaataatgtggtattgtcttacaaggacatgagtcatacaaattcttatggcctgata
cgtggccttcaatttgcatcttttgttgtccaatattatggactcgtgctggatctgttg
cttttgggtttgactcgtgccagtgaaattgctggtccaccccagatgcccaatgagttc
atcacctactgggacactaaagttgaaacaaggcatcctattcggttatattctcgatac
atagacagggtgcatatattgttccgctttactcatgaggaggctcgggaccttattcag
agatatcttactgaacatccagatcccaacaatgaaaatatggtaggatataataataag
aagtgttggccaagagatgccagaatgaggctaatgaagcatgatgtcaatctggggagg
agtgtgttctgggacatgaagaatcgtcttcctcgaagtatcacaactttggaatgggag
aacagttttgtttctgtttacagcaaggacaatccaaaccttctcttcagcatgtgtggg
tttgaaataaggattcttcctaaaataagaatgactcaggaagcattcagcaatacaaga
gatggagtttggaatttgcagaatgaacagactaaagaacgaacagcagttgcattctta
cgagttgatgatgaacacatgaaggtgtttgagaatcgtgtcagacagattcttatgtct
tcagggtcgacaacatttacaaaaattgtcaataaatggaatactgcccttattggtctg
atgacttacttccgtgaagcaactgtgcatacacaagagttgttggatctgcttgtcaaa
tgtgagaataagattcagacacgtatcaagattgggttgaactcaaaaatgcctagcaga
tttccccctgtgatcttctacacaccaaaagaaattggaggacttggcatgttgagtatg
ggtcacatattgattccacagagtgacctcagatacagccaacagactgatgttggggtg
acccattttaggagtggaatgagtcatgaagaggaccagctgattcctaatctctaccgt
tacattcaaccctgggaaagtgagttcatagattcacagcgtgtttgggcagaatatgca
ttgaagaggcaagaagctcaggcacaaaatagacgtctaacccttgaagatttggaggat
tcttgggatagaggaattcctcgaataaatacactgtttcagaaggacagacacacactg
gcatatgataaaggttggagggttcgaacagatttcaagcagtaccaagtactgaagcaa
aatcctttctggtggacacatcagaggcacgatggtaaactatggaacttgaacaactac
agaacagatgttattcaagctcttggaggtgtggagggaattctggagcacacgttgttc
aaaggaacatattttccaacatgggaaggtctcttttgggagaaggcttctggttttgag
gagtccatgaagtacaaaaagttgactaatgcacagagatctggtctcaaccaaattcca
aaccgtagatttactctttggtggtcgcccactataaatcgagccaatgtttacgttggt
tttcaagtgcagttggatttgactggaattttcatgcatgggaagattcccactttgaag
atatcattgattcagatattccgtgctcacttgtggcagaagattcatgagagtgttgtc
atggatctttgtcaggttttagatcaggagctggatgccttggaaattgaaactgtgcaa
aaggagactattcatcctaggaagagttacaaaatgaacagttcttgtgctgacattctt
ctctttgcagcccacagatggccaatgtcaaaacctagtcttgttgctgagccaaaagat
gtttttgatcagaaggccagcaataaatactggattgatgtacaacttcgctggggagat
tatgattctcatgatattgagcgttacacaagggccaagttcatggattacacaactgac
aacatgtctatttatccttcacctactggtgtgatgattggtcttgacttggcatataat
ctgcactctgcatttggtaactggttccctggttcgaaaccactcatccagcaagcaatg
aacaaaatcatgaagtcaaaccctgctttatatgtgttgagggagcgtataaggaaagga
ttgcaattgtattcttcagagcctacagaaccgtacttgtcctcacaaaactacggtgag
atctttagcaatcagatcatatggtttgtggatgatacaaatgtgtaccgtgtcacaatt
cacaagacatttgaaggaaatctgacaacaaaacccattaatggtgctatttttatattt
aatccaaggactgggcagctattcttgaaggtcatccacactagtgtatgggcgggtcaa
aaacgtctaggccagctggccaagtggaaaactgctgaagaagttgctgctcttgtacgt
tctttgccagttgaggagcagccgaagcaaattattgtgactcgtaaaggaatgcttgat
cctttagaggttcatttgcttgattttccaaacattgttataaaaggaagtgaactgcag
cttccattccaagcttgcttgaagattgagaaatttggggatcttatcttgaaggcaact
gaaccacagatggttctttttaacatctatgatgattggttgaagagtatttcatcttac
actgcattctccagactcattttgattttaagagcacttcacgtgaacaatgagaaggca
aagatgttgctgaagcctgacaaaacaattgttacagaggcacaccacatatggccttct
ctcactgatgatcaatggatgaaggttgaggttgctttaagggatctcatactatcagac
tacgccaagaagaacaatgtgaatacttcagcccttacacagtctgagattcgtgatatc
atacttggtgctgaaattactccaccttcccaacaaagacaacagatagcagagattgaa
aaacaagcaaaagaagcaagtcaactgaccgcagtgacaacaaggacaacaaatgttcat
ggtgatgagctcatagtaactactacaagtccctacgaacaatctgcttttggctctaaa
actgactggcgtgtgagggcaatatcagctacaaatctttatctccgtgtcaatcacatt
tatgtgaattcagaggatataaaggaaacggggtatacttacattatgccaaagaacata
ttgaagaaatttatttgcatagcagatttgcgtactcaaattgctggatacttgtatggt
gtaagcccacctgacaacccccaggtcaaggaaattcgttgcattgccatgcctccacag
tggggtactcaccagcaagttcaccttccctctatgctcccagagcatgatttcctaact
gatttggaacctttgggatggatgcacacgcagccaaacgagcttcctcagctatcccca
caggatcttacctcccatgctaaggtccttgagaacaacaagcagtgggacggggagaag
tgcatcattttaacatgcagtttcacgcctggttcctgttccttgactgcctacaagctt
actccatctggatacgagtggggacggatcaacaaggacaccggaagcaatcctcacggg
tacctcccaactcactacgagaaagtccagatgcttctcagtgaccgcttcctcggtttc
tatatggtgccagatactggtccatggaattacaactttatgggtgttaagcataccccc
agcatgaagtttggcgtcaagcttggtacgccgagggagtactatcacgaggaccacaga
ccaactcatttcttggaattcagcaacttagaggagggtgatatagctgagggagatcgt
gaggatacattctcatga
DBGET
integrated database retrieval system
