Cannabis sativa (hemp): 115705432
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Entry
115705432 CDS
T08987
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115705432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115705432
Spliceosome [BR:
csav03041
]
Complex A
U1 snRNP components
U1 related factors
115705432
Complex B
115705432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_RHG35_4th
WW_TCERG1
PAS_6
Motif
Other DBs
NCBI-GeneID:
115705432
NCBI-ProteinID:
XP_030488626
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All DBs
Position
1:1614199..1627980
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AA seq
1005 aa
AA seq
DB search
MDPQSLPAMPFQFRPPVPAQQSQQFIPVTSQHFQPVGRGVPPMNVAMPPGPPQAPQPFYS
QQVQQFPPQPMPLPIAHPNSHPLPVAHPNNHLFPVGHPQHSAQTPNNFTPNIVGPGTPLS
SSYTFAASYGQMQRGFSDSTQYQSIQMHVVNVSSEGQPMLSAQSQSSVPVTSQHQTIEKP
SMTNISAPVSNVQLNLIQSEWLEHTSPDGRKYYYNRRTKLSSWEKPVDLMTPIERADAST
NWKEFTSPDGKKLVHSWYYYNKVTKESKWVMPEELKLAREQLANVSLKESQDKANVSLKD
PREKESWPASDTVSSPKVESAPYVDTSSKAQGIASSPVSVEPISSAGEQQAVVVSRSSSS
PVAAPTTKASVDGYHSSISVPSTSNTSTEGIGAVTTAVTEPMNNSDNSAQDFTASAGVSA
HKEEALKDVTVEMSKEIAAEDKTVEPEPLVYATKLEAKNVFMSLLESFNVGSDWTWDRAM
RVIINDKRYGALKSLGERKQAFNEFLNQRKKLDAEERRMKHKKAREEFKKMLEESTDITP
STRWSKLESLFENDVRFKAVERDRDRRELLESHIEELLKKEREKAMEQRKRHIMEYRQFL
ESCDFIKVNSQWRKLQDRLEADERCSCLEKIDRLDVFQEYIRDLEKEEEEQRKIQKEELR
KAERKNRDEFRKMMEDHVVDGTLTIKTHWRDYFMKVKDLPAYVAVSSNTSGSTAKDLFED
ALEELQKQYHDDRTRIKDAVKSGKIMLSSTSTFDDFKHMITGEISSPPVSDFNLRFVFDE
LLERVREKEDKEAKKRKRCMEDFSDLLSSTKDITALSGWEDCKQLFENSQEYSSIGDENL
CQQIFEKHVTQLKERAKEREQAKVKEQKRKEEKTRKEKERNEGERSKFKHRREKEEHLEK
DVSDNENFDAEGHLNKDNKRSGKDSSRKHRKRHHNYDDGADENENDQLKKSHGSSSSHKK
SRRHTSASESDQESRSRRHRRDHRHSSRRSGDLEDGEFGDGREDS
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcaaagtttgcctgccatgccttttcaattccggcctcctgttcccgcacag
cagtcacaacaattcattcctgtgacttctcagcattttcagcctgttgggcgaggtgtt
ccacccatgaacgttgcaatgcctcctggtcctcctcaagctcctcagcccttttattcc
caacaagtgcagcagtttccaccacaaccaatgccattgccaattgctcatccgaacagc
caccccttgccagttgctcatccaaacaatcatctcttcccagttggtcatcctcagcat
agtgctcaaactccaaacaatttcactcctaatatagttggcccagggacacctctctct
tcatcatatactttcgccgcttcctatggtcaaatgcaaagaggtttcagtgattccacc
cagtatcaatcaatacaaatgcatgtggtaaatgtttcttcagaagggcagcctatgtta
tcagctcaaagccaaagcagtgttcctgttacatcccagcatcagactattgaaaagcct
tcaatgacaaacatcagtgctccagtatccaatgttcagctcaacctcatccaatcagag
tggttagaacacacgtctcctgatggaagaaaatactactacaataggaggacaaaactt
tccagttgggagaagccggtggatttaatgacccccattgagagggcagatgcatcaact
aactggaaggaatttactagccctgatggaaaaaagttggtccactcttggtattactac
aacaaagtcaccaaagagtcaaaatgggtgatgcctgaggagctgaagttggcgcgtgag
caactagcgaatgtatctctcaaggaatcacaagataaagcaaatgtatcactcaaggat
ccacgagagaaagaaagttggcctgcctctgatactgtttcttctccaaaggttgaatct
gcaccctatgtcgatacatcctccaaagcccaaggaatagcatcaagtcctgtttcagtg
gaacctatttcatctgctggtgaacagcaagctgtggtggtttcaagatcatcttcctcc
cctgttgcagctcccactacaaaagcaagtgttgatggatatcatagctctattagtgtt
ccttctacatctaacacttcgactgaaggcattggtgctgtcaccactgcagtcacagaa
ccaatgaataatagtgataattcagctcaggattttactgcttcagctggagtatctgca
cataaagaggaagcattaaaagatgtaacagtagagatgagtaaagaaattgccgcagaa
gataaaacagttgaaccagaaccattggtttacgcaactaagctggaggcaaaaaatgta
tttatgtcgctgttggaatcttttaatgttggatctgactggacatgggatcgggccatg
agagtaataattaatgacaaaaggtatggtgctctgaaatcacttggagagcgaaaacaa
gcttttaatgagttcttgaatcaaaggaaaaagctggatgcagaagaaagacggatgaag
cacaaaaaggcacgagaagaatttaaaaaaatgttggaggaatcaacagatattacacca
tctacacgatggagtaaattggagagcttatttgaaaatgatgtgcggtttaaagcagtt
gaacgagatagagaccggagggagctgcttgagagccatattgaggaactcctaaagaag
gaacgagaaaaggctatggagcaacgtaagcgccatataatggaatacaggcagtttttg
gagtcttgtgactttatcaaggtaaacagccagtggcgaaaacttcaagatcgcttagaa
gctgatgagaggtgttcatgtcttgaaaaaattgatcgactggatgtctttcaggaatat
atacgtgatttagagaaggaagaggaagagcagaggaagatacagaaggaggaattaaga
aaggcagagcgcaaaaatcgtgatgagtttcgtaaaatgatggaagatcatgttgttgat
ggcactcttacaataaaaactcactggcgtgattatttcatgaaggttaaggacttgcct
gcatatgtggcagtttcatcaaacacctctggctcaactgcaaaagatttatttgaagat
gctttggaggagcttcagaaacaatatcatgatgatagaactcgaataaaggatgcagtc
aagtcaggaaagattatgctttcatcaacctcaacatttgacgacttcaaacacatgatt
acaggagagattagctcgccgccagtatctgatttcaatttgaggtttgtttttgatgag
ttacttgaaagggtcagagaaaaggaggataaagaggctaaaaagcgtaaacgctgtatg
gaagatttttctgatctgctgtcttctactaaggatataacagcattgtctggatgggag
gactgcaaacagctttttgaaaatagtcaagagtacagttccattggtgatgagaatctc
tgccagcagatatttgagaagcatgtaacacaacttaaagagcgggcaaaagagagagag
caggcgaaagtgaaggagcagaaaagaaaggaagaaaagacaaggaaggaaaaggagaga
aatgaaggagaacgaagcaagttcaagcacagaagggaaaaagaggagcacttggagaaa
gatgtatctgacaatgaaaattttgatgctgaaggtcatttgaacaaagataacaaaagg
tcagggaaagacagtagtaggaagcataggaagcgacatcacaattatgacgacggtgca
gatgaaaacgagaacgatcagttaaagaaatcacatggttctagtagcagccacaagaaa
tcaagacggcatacatctgcttctgaatccgatcaagaaagcaggagtagaagacatagg
agagatcatcggcatagttctcgtagaagtggtgatcttgaagatggagaatttggtgat
ggccgggaggattcataa
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