KEGG   Cannabis sativa (hemp): 115705449
Entry
115705449         CDS       T08987                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03013  Nucleocytoplasmic transport
csav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115705449
  09122 Translation
   03013 Nucleocytoplasmic transport
    115705449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csav03019]
    115705449
   03041 Spliceosome [BR:csav03041]
    115705449
Messenger RNA biogenesis [BR:csav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     115705449
Spliceosome [BR:csav03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115705449
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_Prp19 EIF3I WD40_WDHD1_1st WDR55 Beta-prop_WDR41 Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 DSE1_N Beta-prop_NOL10_N Beta-prop_ACSF4 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_Nup120_160 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 115705449
NCBI-ProteinID: XP_030488647
LinkDB
Position
1
AA seq 372 aa
MCGDVTNWDEETYRETILKDREIQTRTVFRTAWAPSQNPNPDSIVVASSDGSLGSYSISS
IISDLPLGLGNAKAPHYFEAEPECFLQGHEGPLYDVKFYGDGEDALLLSCGDDGRIRGWR
WKDCTESDVPIPLQGKHMRPVLDLVNPQHKGPWGALSPVPENNAIAVNTLSGSIYAAAGD
SCAYCWDVETGQVKMVYKGHSDYLHSIIARNSTNQIITGSEDGTARIWDCRSGKCIQVIE
PGKEMKLKGYSSYVGCISLDASESWLACGSGRSLSIWNLPASECISKISTSASVQDVVFD
ENQILAVGAEPLLNRFNINGEILSQIQCAPQSAFSVSLHPSGVTAVGGYGGLVDVVSQFG
SHSCTFRCQFEY
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgtgcggcgatgtcaccaattgggacgaagagacttacagggaaaccatattgaaggat
agggagattcaaactcgaaccgttttcagaactgcttgggctccctcccaaaaccctaat
ccggactccatcgtcgtcgcctccagtgacggatcactcggttcttactccatttcttca
attatctctgaccttccactgggactagggaacgccaaagctccacactattttgaggct
gaacctgagtgtttccttcaagggcatgaaggacctttatacgatgtgaaattctatggt
gatggtgaagatgctctgttgctaagttgcggtgatgatggtcgtattcgaggatggagg
tggaaggattgtacagaatctgacgttcctattcctttgcaaggaaagcacatgagacca
gttcttgacttggtgaatcctcaacacaaaggtccttggggagctttatctccagtccct
gagaacaatgctattgctgttaatactctgagtgggtccatatatgcagctgcaggagat
tcttgtgcttattgttgggatgtggagactggtcaagtgaaaatggtttataaggggcac
tcagactacttgcatagcataattgctagaaactctactaatcagattataactggttca
gaggatggcacggcacgaatatgggattgcagaagtggaaagtgtattcaagtgattgaa
ccaggaaaggaaatgaagctgaaaggatattcctcgtatgtcggttgcattagtcttgat
gcaagtgaaagctggttggcttgtgggagtggtcggagtttatcgatatggaaccttcct
gcttctgaatgtatttcgaagatttcaacttctgcatctgtgcaggatgtggtttttgac
gaaaatcaaatactagcagttggggcagaacccctgctcaaccggttcaatataaatggg
gagattctttcacaaatacaatgcgctcctcagtcagccttctctgtctctttacatcca
tctggggttacagccgttggtggttatggaggtcttgttgatgtcgtctcacaatttgga
agccactcatgcacatttcgctgccaatttgaatattaa

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