Cannabis sativa (hemp): 115705470
Help
Entry
115705470 CDS
T08987
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115705470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115705470
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115705470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
115705470
NCBI-ProteinID:
XP_030488667
LinkDB
All DBs
Position
1:complement(4940894..4948944)
Genome browser
AA seq
1086 aa
AA seq
DB search
MQRQKTIFSFFQKPAPVNPSSGSQLVSQVPVTESALEIKGTDTPPEKVPRQIFPASYVAN
ESKTDSSLFSSIMHKFVKPTEREKLSKRNNSHGNSVDNSIVSEQSIKPKQLSEPGLASQP
SGEIGVVKSNGKANQICTVNIESDDNNLGPETPGTQRFVPRLKRIQDDVPASKDKHDRLL
SSSKKLKLLEESTGLNRNRLEISETASKFEWLDPSRIKDANGRKRDDPLYDSTTLYIPAD
ALKKMSASQKQYWNVKCQYMDVMLFFKVGKFYELYEIDAEIGHKELDWKITLSGVGKCRQ
VGVPESGIDDAVQKLVARGHKVGRIEQLETSGESKARGSTSVISRKLVQVVSPSTATDCN
IGPDAVHLLAIKEGKFEQENGSTVYGFAFVDCAALKFWVGSIKDDASFAGLGALLMQVSP
KEVLYESRGLSKEVQKALRKYSLTGSSSPQLTPVQPTTDFADAPEVRTLIQLKGYFKGSS
NMWDQSLGNVMHHDITLSALGGLINHLSRLMLDDVLQNGDVLPYQVYRGCLKMDGQTLIN
LEIFNNNADGGTSGTLYKYLDNCVTSSGKRLLRRWICHPLKDVDRINYRLNVVEALMQHP
EIMLVVAQYLRKLPDLERLFGRIRATVKSSATLSVPVYGKKVLKQKVKVFGTLVKGLRVG
FDLLLLLEKEKNEFSLLSKIFSLPHLSGSGGLDQFLSQFEAAVDSDFPNYQNHDVTDRDA
EIISILIELFIEKASEWSQIIHAINCIDVLRSFAVTASFSSGTMSRPVILPLTKNVTSNG
VARRPVLKIKGLWHPFAFGDNGRVPVPNDVVLGEDANGYGPPTLLLTGPNMGGKSTLLRS
TCLAVILAQLGCYVPGEMCVLSLVDTVFTRLGATDRIMTGESTFFIECTETASILHHATQ
DSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVLVQH
MACYFKPKSESFSQNEDLVFLYQLTSGACPESYGLQVATMAGIPQKVVNAASKAGRIMKK
SIVGDSFKSSEGRAEFSTLHEEWLKSLMNISLVGSSKSPDEEDDVFDTLLCLWHELKSSY
RSGQIK
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtcagaagaccatcttctccttcttccagaaacccgcgccggtaaaccctagc
tccggcagccagcttgtctctcaagttccggtgacggaatcggctttggagatcaaagga
accgacactccgccggaaaaagtgcctcgtcagattttcccggcgagttatgtcgcaaat
gagagcaaaaccgattcatcattgttctcgagtattatgcataagtttgtgaagcctact
gaacgggagaagctctccaaaaggaacaactcacatggaaactccgtggacaactctata
gtttctgaacagtctattaaacccaagcaattgtctgaacccggattggcttctcagcct
tctggagagatcggtgttgtgaaatccaatgggaaagctaatcaaatttgtaccgtgaat
attgaaagtgatgataataatcttggaccagaaacaccaggaacacaacgttttgttcca
agattgaagcgaattcaagatgatgttccagcgtccaaggataagcatgacagattgctg
agttctagcaaaaaactaaaacttttagaggaatcaacaggtttgaatagaaatcgtttg
gaaatatctgagacggccagcaagtttgagtggcttgatccatctcgaatcaaagacgct
aacgggaggaagcgtgatgaccctctttatgacagtacaacactttatatacctgctgac
gctttgaagaaaatgtctgcatcacaaaaacaatattggaatgtcaaatgtcaatacatg
gatgtcatgcttttctttaaagtgggaaaattttatgagctgtatgaaatagatgctgaa
ataggtcataaggagcttgattggaaaataacactaagtggagttggaaaatgccggcag
gttggggtccctgaaagtggaattgatgatgctgttcagaagttggttgcacgcgggcat
aaagttggccgaattgagcagttggaaacatctggagaatcaaaggctagaggttcaact
tctgtaatatcaagaaaactagttcaggtggtctcaccatcaactgcaactgattgtaat
ataggacctgatgctgttcatcttctggcgataaaagagggtaagtttgagcaggaaaat
gggtcaactgtgtacgggtttgcttttgtagattgtgctgctttaaaattttgggttggc
tccatcaaagatgatgcatcctttgctggtttgggggctttattgatgcaggtgtcacct
aaagaagttttgtatgaaagtagagggttatccaaagaagttcagaaagcactcagaaag
tattctttaacaggttcttcatctccacaattgactccagtgcagccaactactgatttt
gcagatgctcctgaagtaagaaccttaattcagctaaaaggttacttcaaggggtcttca
aatatgtgggatcaatctcttggcaatgtgatgcaccatgatataactttgtctgctctc
gggggacttatcaatcatctttctagattgatgttagatgatgttttacaaaatggggat
gtattaccataccaagtgtataggggctgcctcaaaatggatggacagacactgataaat
cttgagatattcaataacaatgctgatggtggtacttctggtacattatacaaatatctt
gataactgtgtgacatcatctggtaagaggctgctaaggaggtggatctgccatccgctg
aaagatgttgacagaattaattataggcttaatgttgtcgaagctctaatgcaacatcca
gaaattatgctagttgttgctcagtatcttcggaagcttccagacctggaaaggttgttc
ggacggattagggctactgttaagtcatcagctactttgtcagtacctgtatatggaaaa
aaagtgctgaagcagaaagttaaggtatttgggactctagtgaagggtctcagggttggc
tttgatttgttgttgttattagagaaggaaaaaaatgaattttctcttttgtcaaaaata
tttagtcttcctcatctgagtggaagtggtgggcttgatcaatttctttctcaatttgaa
gcagctgttgatagtgactttcctaattatcagaatcatgatgtaacagatagagatgca
gaaattatctctattctgattgagctgttcattgagaaagcgagtgaatggtcccaaatt
atccatgctatcaactgcattgatgtgctaagatcctttgcagttacagctagcttttca
agtgggaccatgtcaagacctgtcattttgcctctaacaaaaaatgtgacttcaaatgga
gtggccagacgtcctgtacttaaaatcaaggggttgtggcatccatttgcatttggagat
aatggacgagtgcctgtcccaaatgatgtagttcttggtgaagatgcaaatggttatggt
ccacccacgctgttattaacgggacctaatatgggtggtaaatcaactctcttgcgttcc
acgtgtctagctgttatactggctcagctgggctgttacgtgcctggtgaaatgtgtgtt
ctctcacttgtggatactgtatttacaaggcttggtgcaactgaccgaatcatgacaggc
gagagtaccttctttattgagtgcacagaaacagcatcgatacttcaccacgcaactcaa
gattctttggttattcttgatgaattgggccgaggaacaagcacttttgatggatatgcc
attgcctatgctgtatttcgacatctcattgaaaaagtcaattgccgattactctttgca
actcactaccacccactgaccaaggaatttgcttctcatccacatgtcctcgttcaacat
atggcctgctatttcaagccaaaatctgaatcattttcccagaatgaggatcttgttttt
ctataccagctcacctcaggagcatgtccagagagctatggcttgcaagtggcaaccatg
gctggaattccgcagaaggtggtcaatgccgcttcaaaggctggccgaataatgaagaaa
tcaatagttggagatagttttaagagtagtgaagggagagcagagttctcaactctccac
gaggagtggttaaagagtcttatgaatatctcattggttggaagttctaaatctcctgat
gaagaagatgatgtttttgacactttgctttgcttgtggcacgagctaaagagctcgtat
cggtcggggcaaataaagtaa
DBGET
integrated database retrieval system