Cannabis sativa (hemp): 115705727
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Entry
115705727 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115705727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115705727
03012 Translation factors [BR:
csav03012
]
115705727
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115705727
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115705727
Translation factors [BR:
csav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115705727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
AAA_19
ATPase
AAA_16
Myosin_head
PhoH
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
115705727
NCBI-ProteinID:
XP_030489001
LinkDB
All DBs
Position
1:complement(28993449..29005274)
Genome browser
AA seq
1160 aa
AA seq
DB search
MHNSKVAIAFLIRRTKSFSYNKQSFLLSSSSFCISRATSNLFSLLPPHSSSSSSAVSYGS
FLVPLRSYRGYAAEQFSDDEYDCDFESHSASSSVANIDEWKWKLSLLLRNEKEQEIVSRD
KRDRRDYEQISNLAKRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRR
VEGLLQEHLDRCELNSGKVTNSLGDDKPINQVEDVILDENADSFLDRSVMEKVLQRKSLR
MRNMQRTWMESPEGKKLLEFRKSLPSFKEKDRLLQAIAQNQVIVISGETGCGKTTQLPQY
VLESEIESGRGAFCSIICTQPRRISAMTVAERVSTERGEPLGETVGYKVRLEGMRGKNTH
LLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMS
ATLNADLFSNFYEGAPTIHIPGFTYPVKAHFLEDVLEMTGYKLSSFNQVDDYGQEKLWKT
QKQLVPRKRKNLITTLVEDALNKATFETYSPRSRDSLASWVPDSIGFNLIEAVLCHICRK
ERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFDRPPPNV
RKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRKGRAG
RVQPGECYHLYPKCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSSALQPPEP
LAVQNAIGFLKMIGALDENENLTPLGKFLSMLPVDPKLGKMLIMGAVFHCFDPVLTIVSG
LSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFL
SAQTLQAIHSLRKQFSFILRDAGLIDVDASNNNRLSHNQSLVRAIICSGLFPGIASVVHR
ETSMSFKTMGDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILF
GGALHQGVQAGHLKMLDGYVDFFMDPSLAECFLKLKEELNMLIEGKLQDPSLDIHREGKY
LLLAAQELVSGDQCEGRFVFGRESKRPRESNDNSRFTKDGTNPKSLLQTLLMRAGHSPPK
YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSDNSRDEDDNTP
PDVTDNMLKLLGKRRRSKGR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcacaattcaaaggtagccatagcttttctcatacgccgcaccaaatcattctcttac
aataaacagtctttccttctctcctcttcttcattttgcatttctagggcaacaagtaat
ctgttctctctgctcccgccacattcttcttcttcttcttccgccgtttcatatggtagt
tttctagtcccgttgcgtagctatcgcgggtacgccgctgagcagttctccgatgacgag
tacgactgcgattttgagagccactcggcatcatcttcagttgccaacattgatgaatgg
aaatggaaactcagccttctattacgcaatgaaaaggaacaagagattgtttccagagat
aagagagatagaagagactatgagcagatatctaatcttgccaaaaggatgggactttat
agtgaactttatggcaaagtggtggttgccagcaaggttcctcttcctaattacaggcca
gatttggatgacaagcggccacaaagggaggtagttataccactaggcttgcagaggagg
gtggaaggtttgctacaggaacacctagatcgatgtgagctaaattctggaaaggtcact
aacagtttgggtgatgataagcctataaatcaggttgaagatgtgattttggatgagaat
gccgactctttccttgatcgctctgtcatggaaaaggttcttcagaggaagagtttgcga
atgcgtaatatgcaaagaacttggatggaatcacctgaaggcaagaagttgttggaattt
cggaaatcactgccttctttcaaggagaaggataggttgcttcaggcaattgcacaaaat
caggtgatagttatatctggtgagactgggtgtgggaagaccactcaacttcctcagtat
gtgctggagtcagagattgaatctggacgaggagcattctgtagcatcatctgtacgcag
cctcgaagaatttctgctatgactgttgcagaaagagtgtctacagagagaggagaacct
cttggtgaaacagttggctataaagttcgattagagggaatgagaggaaagaacacccac
ttgcttttctgtacaagtggtattttacttcggcgtttgctgagcgatcgcaacctaaat
ggcataacccatgtttttgttgatgagattcatgagcgaggaatgaatgaagacttccta
ttgatcgtgttgaaggatttacttcctcgccgtcgagatctgagattagttttaatgagt
gctacactaaatgctgatctattttctaatttttatgaaggggcaccaacaattcatatt
ccaggttttacttacccagtaaaagcacattttcttgaagatgtactagaaatgactgga
tataagttgagttcattcaatcaagtcgatgattacggccaagagaagctgtggaaaaca
cagaagcagctagttccccggaaaaggaaaaacctgatcactactcttgttgaggacgct
cttaataaggcaacatttgagacttatagcccaaggtcacgtgactcgttggcatcttgg
gtgcctgattccatagggttcaatctaattgaggcagttttatgccatatctgtagaaag
gaaagaccaggcgctgttctagtgtttatgactgggtgggaggatatcagctgcttgagg
gatcaacttaaagcccatccccttttgggtgatcctaatagagttttacttctaacctgc
catggttcaatggcgacttctgaacagaaacttatattcgacagaccacctcctaatgtt
cggaaagtcattctggctacaaatatggcagaggcaagcattacaatcaatgatatagtt
tttgtggttgattgtgggaaggcaaaagagacgacatatgatgctttgaataatacccct
tgtcttctaccttcctggatatcacaagcatctgctcggcaaagaaaaggtagggctggc
cgtgtgcagccgggagaatgttaccacctgtatccgaagtgtgtttatgaagcttttgca
gaatatcagcttccagaactcctgaggactcctttaaactctctatgcttgcaaataaaa
agcctgcaggttggaagtataggagaattcttgtcatctgccctgcagccaccagaacca
cttgctgtccaaaatgctattggctttctgaagatgatcggggcacttgacgaaaatgaa
aatttaacacctcttggaaagtttttatcaatgctcccggtggatcctaaactagggaaa
atgctgatcatgggtgccgtctttcattgttttgatcctgttcttacaatagtatcagga
ctcagtgtgagggatcctttcttattgcctcaagataagaaagatttggcaggaacggca
aagtctagattttcagctaaggattacagtgatcatatggctcttgttcgtgcatacgaa
ggatggaaagatgcagaaagagaagggtcggcgtatgagtactgctggaggaatttcctc
tcagcccaaacacttcaagctatccattctctgcggaagcaatttagcttcattctcaga
gatgctgggttgatagacgttgatgcaagcaataataaccgactaagtcacaaccaatca
ttagtccgtgcaataatttgttctggcctttttcctggcatagcgtctgtagtgcaccgt
gagacatctatgtctttcaaaacaatgggagatggtcaggttttactatacgctaattct
gttaatgcacgttaccaaacaattccctacccatggttggttttcggtgaaaaagtaaag
gtcaatactgttttcatacgtgattctactggtgtctctgattcaatactgattcttttt
ggtggtgctttacatcaaggagtgcaggctggtcatttgaaaatgttggatggttacgtt
gactttttcatggatcctagtttagctgagtgctttttaaagcttaaagaagaacttaat
atgcttattgaagggaagcttcaagatccgagcctggatattcacagggaagggaagtac
cttttgcttgcagcacaagagctggtatctggagatcaatgtgaaggaagatttgtattt
ggtcgggaaagcaagaggcctagggagtctaatgacaacagcagatttacaaaagatgga
acaaatccaaagagcttgcttcagactttgttgatgagggcaggtcactcacctccaaaa
tacaagaccaagcatctcaaaactaatgagttcagggcgcttgtggagttcaagggtatg
caatttgttgggaaacccaagcgaaataagcagcttgctgagagggatgctgctgtagag
gcattggcatggctgactcacacttcagataacagccgtgacgaggatgataacacccca
cctgatgtcactgataacatgctgaaacttcttgggaagcgtagaagatctaaaggtcgg
taa
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