Cannabis sativa (hemp): 115705949
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Entry
115705949 CDS
T08987
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav04120
Ubiquitin mediated proteolysis
csav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115705949
04120 Ubiquitin mediated proteolysis
115705949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csav04121
]
115705949
Enzymes [BR:
csav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115705949
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115705949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
ENOX1
zf-RING_5
zf-RING_Vps41
zf-RING_11
zf-RING_16
FAR1_N
Motif
Other DBs
NCBI-GeneID:
115705949
NCBI-ProteinID:
XP_060964577
LinkDB
All DBs
Position
1:53871906..53876165
Genome browser
AA seq
500 aa
AA seq
DB search
MMRLQSYAGLSSFATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQL
TKRVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTALLLIKALHWLA
QKRVEYIETTPSVTTLSHIRIVSFLGFLLTLDSLFLYTSVNELIQSRKASVSLFFSFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELIATDATCIICREEMT
SAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPDNATSATGGQNVSRSDTHQGTGTS
GSSAQGSAGGNLSQHQARLQAAAAAASIYEKSYVYPSANTPAWYPGYVCPQVQEPLPSSS
GIESSGEQANFSNDWQRLNSDPKIQDYLREAQLKLVQQQIENLQNQLQLLQKAKAEESPN
AGSKEKNVESSFDSQYGHHD
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttgcagtcgtatgcagggcttagttcttttgctactctagcagttatttat
catgcatttaacagtagaggccagttttaccctgccatggtttatttatctacttcaaag
atcagtttggtactacttctcaacatgggtttggttattatgtgtatcttgtggcaatta
actaagcgggttttcctcggaaccctccgagaagctgaggtcgagaggctaaatgagcaa
tcatggagagaggtcatggaaattcttttcgcaatcactattttccggcaagatttttca
gtttcatttcttgccatggttactgctctgttattgatcaaggctttgcattggctggct
caaaagagagttgaatacattgagactacaccatcagtaacaacattatctcatattcgg
attgtctcttttcttggtttccttcttacgctagacagtctctttttgtatacttcagta
aatgagttgatacagtcacggaaagcttcagtttctcttttcttttcatttgagtacatg
atccttgcaacaacaacagtgtcaacattcgtcaaatatgttttctatgtcagtgacatg
cttatggagggacagtgggagaagaagcctgtctatacattttatttggaactcatacgt
gacttgcttcacttgtctatgtacctgtgcttcttccttgtgattttcatgaattatgga
gtacctctacacttgatacgggagctctatgagacgtttaggaactttaagattcgtgta
gctgattacattcgttaccgaaagatcacttcaaatatgaatgaccgatttcctgatgcg
acacctgaagagctcattgcaactgatgcaacttgcattatttgccgtgaagagatgacc
tctgccaagaaattgatttgtgggcaccttttccacgtgcattgcttgcgttcatggtta
gagcgacaacatacatgtcctacctgcagagctttagttgtgcctcctgataatgcaaca
agtgcaactggaggacagaatgtatctcgatcagatacacatcaagggacaggaacttca
ggttcatctgctcagggttcagctggtggtaatttgagccagcatcaggccaggctccaa
gctgccgcagctgctgcctcgatatatgagaaatcttatgtttatccttctgcaaacact
ccagcatggtatcctggatatgtatgcccccaggtgcaggaacccttacccagttcgtct
ggtatcgaatctagtggcgaacaggcaaatttctctaatgattggcagaggttgaacagt
gatccgaaaatacaagattatctacgggaagctcaactgaagcttgttcagcagcagata
gagaacctacaaaatcaacttcaactattacaaaaggctaaagcagaggaaagcccgaac
gcaggcagcaaagagaagaatgttgaatcttcattcgactcgcaatatggacaccatgac
tga
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