Cannabis sativa (hemp): 115706064
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Entry
115706064 CDS
T08987
Name
(RefSeq) uncharacterized protein LOC115706064
KO
K24155
rabconnectin-3a
Organism
csav
Cannabis sativa (hemp)
Pathway
csav04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
115706064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csav04131
]
115706064
Membrane trafficking [BR:
csav04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
115706064
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
115706064
RAVE complex
115706064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_WDR5
WDR55
Beta-prop_IFT122_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_EML
WD40_CDC20-Fz
ANAPC4_WD40
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
WD40_Gbeta
Beta-prop_IFT140_1st
ASA1
Motif
Other DBs
NCBI-GeneID:
115706064
NCBI-ProteinID:
XP_030489440
LinkDB
All DBs
Position
1:25489453..25502586
Genome browser
AA seq
2552 aa
AA seq
DB search
MADTNSVPSASTIDPIQHLPLSLFRSDTIPPAPSRSDPPGSTIDWLPNFADFSWLAYGAS
NLLVISHFPSPLSPNETVIGPIFRQFFELSGDPSLAVNAVSWSPATPSVGELAAAAENCV
WVFCHDSASLKGSFCWSQNAILVQSSKVDAVRWSGSGDGIIVGGVEVVLWKRSNKFWEIA
WKFKADGPQSLVSATWSIKGPSATAEYSSKLQTEGSCNDYTSRCVSVCQSDTKLGYVKVE
LHHPLPVSLIEWRPATGRNSNGNSRNSKRNVLLTYCLDGTVRLWSEIDNGRVRKSGKDDH
KSTRRSFCVAAVVEINQSVNGTLGMDFFVTWATEIEGIYEDVEGTKNLISSNDYDRNKAG
SCEWIIGCGPGRLVSLWAVHCLDDVSPLRFPRVTLWKTLELQDLEVGHLHRTDLPNSKEK
IFLGKATVLRKSLSGPPTMCSFIQLLPSNSLVWSLLYTQTPNNLEDSSLNNHQIENRSSR
TDGYLNLDGHSGKILQVVVHPYSAEVELAVSLDSNGLLLFWSLSSISNCISGPTLVPTWE
LYGKLGTHNSCSKYTSVSWAPPILDQELVLLLGHAGGIDCFVVKICQSEGKNIECHYLCT
IPFRGHGPYEEGPTNIFAIHLPSVRHDILQSHKFLLLGVWMNGFQALSWEVTMHSYDLSG
SSCECDFETTNAAECNMWGFGITFSDKRYCVSLRPSSSHLPEPHSRDHVTSFAVVCPDGL
VSQISASLSDNLSSHPAYTMATGCANGYLKFWRSKLGEVPTSATPWELVGMVMAHEGPIT
AICLSKCGRKIATICEESHSNIVSNLSLWESVHIAGSGAFILEDKINLDKQVIALKWLAL
GNGQFLLGLCLQNQLCIYAQGWSGGQTLLNTGKSMKGEIWCCIARTHTLSPISDFLWGPR
ATPVVVYDSYLSIISQWLFINKEHQAGVDSNNLKTRCLDFASKTQDIHSAIFTDCDIAAV
AVLSPEDDSKDNFVTPRKVNTKMGCGSSSLLSARTQLEHVWDKKLGLWNMLEIVERFGGS
KQFYHPEALFMNIFAGNWKRAFSAVRHLGESLGCASERRCSTEDCSSIIPLIPLSNYFEG
LLQKSSSDKGFNWGGNGGLTTPSYQFLIGSSEFAYNLESDSSNKILMSSSTKSELNAFIE
PLENFYKLAAITTEEKTQILAIIDLLSEMTKPNSAYESLDEPGQRFWVVLKFQQLHFFRR
FGRSATMEELNIDSSLIVWAYHSDCEENLFGSVLPNEPSWPEMRNLGIGFWFTNSAQLRT
KMEKLARIQYLKKKDPKDCALLYIALNRIQVLAGLFKISKNEKDKPLIGFLSRNFKEEKN
KAAALKNAYVLMGKHQLELAIAFFLLGGDIASAINVCAKNLGDEQLALVICRLIEGHGGQ
AEHHLITKFILPSAIEKGDHWLASLLEWEMGNYYQSFMRMFNPLIDSAEKFAFLSNNISF
LEPTIGLYCFTLASKNSMRNAVGDQNTAILGRWAILMTATALDKRGLSVEALECLSTSLS
VLGNMTKGNTSSSSHSDILHGILKPSRHSSNWLADDVAFSLENCAKLDLALKHLSKLIRE
HPSREDIVVQSAGARTGSEKYDNHQFLELVESFRHKFYTELGLFEQKFSLLPLSLIRNIL
ILLSNQGLLVVGYDLFHRYVNQEHAQDKSHAVDRICLYSLMSKAILKATKETSLLFSRFV
VTCSITCSKLKSDMENDVSCENRSSLSNALAYYLQCLLLSSRILRASLRMKCGSLSEDLS
TKFLTALDLIEYSVHFSYVWLLRNYKYLFLMLESLLIKHNDEHILYEVDIAILKKLLPQI
ADFASQRLLDTDVGKGHHISRGLLEDQGFETKHSIPEDERWKIVGACLWRHMSKFMKHQI
KMSYKLEDSYFSDFSHGLSSESCSVTNSDFSDRSIEEQIGLVSLTLVEQLKATVEHVSSY
YTKQLASYLYLKIEHGQHVKTLVWLEDSRSHTRAPPQNLGEDRFTLDMMNDKEGFDILWD
ICADPKMISESFTEEKICSLECFDHKPLKGWSEMSEGGRGVDEAEEILSQETTSGSGTVN
TETGSSAKQPLRNDVSILNSWQKDTTNKQGIAPFRSPREVLKRNGELLEAMCINSIHQGQ
AAVSSNRKGIVFLNWREEVSLRDHSDYVWSEADWPLNGWAGSESTPAPTCVSPGIGLGSK
KGTHLGLGGATVGAGPFARPGRDLTGGGAFGIPGYAGIGASGLGWETQEEFEEFVDPPPR
AGSILTRAFSSHPSRPLFLVGSINTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA
VHFDHCGHRFATAALDGTVCTWQLEVGGRSNIHPTESSVCFDHHASDVTYFPSSGSVIAV
AGYNSKGDNLVIWDTLAPPASSKVSAICHEGGAHSLSVFDNDIGSGSISPLIVTGGRDGD
VCIHDFRYIATGKTKKHKHLSNGGQTINTSSSSDTQAGIGAKVGEQNLNGMLWYIPKAHS
GNITKIRTIPNTSLFLTGSKDGDVKLWDAKKARMVFHWSKLHDKHTFFQPTSRGSSGVVR
AAVMDIQVVSHGFLTCGGDGSVKLIELKDQYL
NT seq
7659 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacaaactcggttccttctgcttccacaatcgacccgatccaacacctccct
ctttctcttttcagatcagacaccatccctccggctccctctcgttccgacccacctgga
tccacaatcgattggctccccaacttcgctgacttctcctggctcgcctacggagcttcc
aatctattagtaatctcccactttccctctccattatccccgaatgaaaccgttattgga
cccattttccggcagttcttcgagctatccggtgacccttccttggctgtcaacgcggta
tcctggtctccggctactccctcggtcggcgagctcgctgccgctgccgaaaactgtgtt
tgggttttctgtcatgactcggcgagtttgaaaggttctttttgttggagccagaatgca
atacttgttcaatctagtaaggtggatgctgtcaggtggagtggttcaggagatggtata
attgtcggtggagttgaggttgttctatggaaaagaagtaacaagttttgggaaattgct
tggaagtttaaagcagatggacctcaaagtctggtttcagcgacatggtctatcaaggga
ccttctgcaacggcagaatactcaagtaagctgcaaactgaaggatcatgtaatgattac
actagcagatgtgtatccgtatgtcaaagtgatacaaaattgggatatgtcaaagttgag
ctacatcatcctttgcctgtgtctttgattgaatggaggccagcaactggtagaaactca
aatggaaattctaggaattctaaaagaaatgtgctgctgacttattgcttagatggaact
gtgaggttgtggagtgagattgataatggacgggtcagaaaaagtggcaaggatgatcat
aaatccactaggcgatctttttgtgttgctgctgtagttgagattaatcagtcagtaaat
gggactttaggcatggatttttttgtaacatgggcaacggaaattgagggtatatacgaa
gatgttgaaggaactaaaaatttgatctcttcaaatgattatgatcgtaacaaggctggc
agttgtgagtggatcattgggtgtggtccaggaaggttggttagtctttgggcagtccat
tgtttagatgatgtctccccattgagatttccccgtgttacattgtggaaaacacttgaa
ttacaagatctcgaagttgggcatcttcataggactgatctaccgaattctaaagagaaa
atatttctcggtaaagccacagttttgaggaaaagtttgtctggtccaccaacaatgtgc
tcatttattcagttgttacctagtaattcattggtctggtcacttctatatacacaaaca
cccaataatttagaagattcatcacttaataatcatcaaatagaaaacagatcttctagg
actgatggatacttaaatttagatggtcattctggaaaaatcttacaagtagttgtgcat
ccttatagtgctgaagttgaactggctgtttccttggattctaatggattacttttgttt
tggtcactatcttcgatctctaattgcatttcgggtccaacattagttcctacatgggag
ctctatgggaaacttggaactcataattcatgttctaagtacacaagcgtgagttgggct
cctcccatattggatcaagagctggtgcttcttttgggacatgctggtggaattgattgc
tttgttgttaagatatgccaaagtgaaggcaagaatatagaatgtcactacttatgtact
ataccttttagaggtcatggtccgtatgaggaaggtccaaccaatatatttgcaattcat
ttgccttctgttagacatgacatcttacagtcacataaatttctgcttttgggtgtatgg
atgaatgggtttcaagctctatcatgggaagttactatgcattcctatgatttatcaggt
agcagctgcgaatgtgattttgagactacaaatgctgctgaatgcaacatgtggggtttc
ggaattactttttctgataaaagatattgtgttagtttacgtccttcctcatcacactta
ccagaacctcatagtcgcgatcatgttacaagttttgctgtggtgtgtccagatggtttg
gtttcacaaatatctgcttctcttagtgataatttatctagtcatcctgcatataccatg
gctacaggctgtgctaatggttatttgaaattttggagaagtaaacttggtgaagtacca
acttctgctacaccatgggagcttgttggcatggttatggcacatgaggggcctattact
gctatatgcttaagtaaatgtggacggaagattgcaaccatttgcgaggaatctcattca
aatattgtcagcaatctttctttatgggaatctgtgcacattgcaggatcaggggctttc
attttagaagataaaattaaccttgataaacaagttattgctttaaaatggttagcctta
ggtaatggtcagttcttacttggactttgccttcagaatcagctgtgtatatatgctcag
ggatggtctggtggtcagactttgctaaacactggaaaatcaatgaaaggggaaatttgg
tgctgcattgcacgtactcatactttatctcctattagtgacttcctttgggggccaagg
gcaacacctgtggtggtgtatgatagttacttgtctataatcagtcaatggttgttcata
aataaagagcatcaggctggtgttgattcaaataatcttaagacacgttgcctagatttt
gcaagtaaaacgcaggacattcattctgcaatattcacagattgtgacattgctgcggtg
gcagtattatcacctgaggatgatagcaaggacaactttgtcactcctagaaaggttaat
acaaaaatgggttgtggatccagcagtttgttgtcagcaaggacccaattggagcatgtt
tgggataaaaaacttggtttatggaacatgctagaaatagtggagaggtttggtggatct
aaacaattttatcatcctgaggcactctttatgaacatctttgcaggcaattggaagcgt
gcattttcagctgtgaggcatcttggtgaatcccttggttgtgcttctgagaggagatgc
agcacagaggattgtagcagtattattccactaattcctctgtcaaattattttgaagga
cttctccaaaaaagttcatctgacaaaggattcaactggggtggaaatggaggtttaacc
acaccatcttatcagtttctgatagggtcgtccgagtttgcttataatttggagtctgat
tcctctaataaaattttaatgtcctcatcaacaaaatctgaactaaatgccttcattgag
ccacttgagaatttctacaagctagctgcaataaccactgaagaaaaaacacaaattctt
gctataatagatcttcttagtgaaatgactaaaccaaactccgcttatgaaagtcttgat
gaacctggacaaaggttctgggttgtgttaaagtttcagcaactacattttttcagaagg
tttggtagatcagcaactatggaagaattgaatattgattcttccctgattgtgtgggcc
tatcactctgattgtgaggaaaatttgtttgggtctgttcttccaaatgaaccatcttgg
ccagaaatgcgtaacctgggcattgggttttggtttacaaattcagcacaattgcgtaca
aaaatggagaaactggcaagaatacagtatctgaagaagaaagatcccaaggattgtgcc
ttgttgtacatagcactgaatagaattcaagttctagctggccttttcaaaatcagcaag
aatgagaaggataagcccctaattggatttctttctcgcaactttaaggaagagaaaaat
aaggcagctgctttgaagaatgcatatgtcttgatggggaagcatcagctggagttggct
attgctttctttctgcttggaggtgatattgcttctgctatcaatgtttgtgcaaagaac
cttggggatgaacaactggcactagtaatttgtcggctgattgaggggcacggtggacaa
gcagagcatcacctaataacaaagtttatacttccatctgcaattgagaagggcgaccat
tggctagcaagccttctggagtgggaaatggggaattactatcaatcttttatgagaatg
ttcaatcccctaattgattctgcggagaagtttgcatttttgtccaacaatatttctttc
ttagagccaactattggtctttattgctttacactagctagcaaaaatagtatgaggaat
gctgttggggaccaaaacactgcaatcctcggtagatgggcaattcttatgacagccact
gccctagacaaacgtggtctttctgttgaagctttggagtgcctttcaacttcattgagt
gtccttgggaatatgactaaaggaaacacctccagctctagtcattctgatattctgcat
ggaattttaaagccttcaagacattcttccaattggcttgcagatgatgtggcatttagt
cttgagaattgtgctaaactagatttggcacttaaacacttatcgaaattgataagagag
cacccaagcagggaagacattgttgttcaatcagctggtgctcgtacgggctcagaaaaa
tatgataaccatcaatttctagaacttgttgaaagctttaggcataaattttacacagag
cttggattgtttgaacagaagttttcgctacttccactcagtctaattagaaatatttta
atcttactatccaatcaagggttattggttgtcggatatgatctatttcatagatatgta
aatcaagagcatgcacaagataaaagccatgcagttgatagaatatgcttgtattccctt
atgagtaaggctatcttaaaggctactaaagaaacctctctgttattttctcggtttgtt
gttacttgcagtataacttgttcaaaactgaaatcagatatggaaaatgatgtttcttgt
gaaaatagatcttccttgtcaaatgctttggcttactatcttcaatgtcttttgttgtca
tcacggattttaagagcttctttgaggatgaaatgcggatcgctcagtgaagatctcagt
acgaaattccttacagctcttgatttaatcgagtattctgtgcatttttcttatgtttgg
cttctaagaaactataaatatctatttttgatgcttgaatctctcctgatcaaacataat
gatgagcatatactgtatgaagtcgacattgccatcctgaagaagcttctccctcaaata
gcagactttgcatctcaaaggttattggacactgatgtgggaaaaggtcatcatatttct
agaggtttgttggaagatcaaggttttgaaacaaaacattcaattccagaagatgaacga
tggaaaattgttggggcctgtttgtggcgacatatgtccaaatttatgaagcaccaaata
aagatgtcctataaacttgaagacagttatttttctgacttttcacacggactttcttca
gaatcatgcagtgtgacaaattcggattttagtgacaggagtatagaagaacagattgga
ttggtctcattgaccttggttgagcaactgaaagcaacagtggaacatgtgtcatcttat
tatacaaaacagctggcatcgtatttgtatttgaaaatagaacacgggcagcatgtaaag
actcttgtttggttagaagattctaggtctcatactagagctccccctcagaatcttggt
gaagatagattcactttggacatgatgaatgacaaagaaggattcgatatactgtgggat
atctgtgctgatcctaaaatgatatccgaaagttttactgaggaaaaaatatgtagtctg
gaatgtttcgatcataaacctttgaaagggtggagtgaaatgtctgaaggtggcagaggg
gtagatgaagctgaggaaatccttagtcaagaaactacttctggaagtggcacggtaaat
actgaaactggatcatctgctaaacagccattacggaatgatgttagtattctgaattca
tggcagaaagacacgaccaataaacagggtattgcacccttccgaagccccagagaagtg
ctcaagagaaacggggagcttttggaggcaatgtgtatcaactccattcatcaaggacaa
gctgccgtttctagcaaccgaaaaggtatagtatttcttaattggagagaagaagtatca
ttaagagatcactcagactatgtgtggtcagaggctgattggcctttaaatgggtgggct
ggttctgaatcaaccccagctcctacatgtgtatctcctggtattggtctcggaagcaag
aaagggacccaccttggactgggtggagcaactgttggtgcgggcccttttgcaaggcct
gggcgagacttgactggtggtggagcatttgggattcctggttatgctggtattggtgcc
tctggcttaggttgggagactcaagaggaatttgaggagtttgtggatcctcctccacgt
gcggggagcatattgactagggctttctccagtcacccctctaggcctctctttttggtt
ggctctatcaatacacacatttacttgtgggagtttgggaaggataaagctactgcaact
tatggagttcttcctgctgcaaatgtacctccaccttatgcccttgcctcaatttctgct
gtccattttgatcattgtggacatagatttgctactgctgcattagatggcactgtttgt
acatggcagttggaggtgggaggaaggagcaatatacatccaacagaatcgtcagtctgc
tttgaccaccatgcttcggatgttacttattttccttcgagtggatcagtaattgctgtg
gctggatataactccaagggtgataatttggttatatgggatacattggctccacccgca
agctcaaaagtttccgctatatgccatgaaggtggtgcacactctctttcggtctttgat
aatgacattggaagtggttcaatttctccacttattgtcactggtggtagagatggtgat
gtttgcattcatgattttcgatacattgctactggaaagactaagaagcacaaacattta
agtaatggcggacaaacgattaacacatcatcaagtagtgacacacaggcagggattggt
gccaaagttggggaacaaaacctaaatgggatgctttggtacataccaaaggctcattca
gggaatatcaccaagataagaacaatcccaaatactagtttattcttaacaggaagcaaa
gatggggatgttaagctttgggatgccaaaaaagctaggatggtatttcattggtcaaaa
ttgcatgataaacatacattcttccaaccaacctctcggggttctagtggggtagttcgg
gctgctgtcatggatatacaagttgtatcacatggttttcttacatgtggtggtgatggt
agtgtaaagctgattgagctcaaagaccaatacttgtaa
DBGET
integrated database retrieval system
