Cannabis sativa (hemp): 115706264
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Entry
115706264 CDS
T08987
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03013
Nucleocytoplasmic transport
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115706264
03015 mRNA surveillance pathway
115706264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115706264
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115706264
mRNA cycle factors
P-body specific factors
115706264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1033
Motif
Other DBs
NCBI-GeneID:
115706264
NCBI-ProteinID:
XP_030489712
LinkDB
All DBs
Position
1:14073722..14086373
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AA seq
1195 aa
AA seq
DB search
MMEVSVCEVKGKMDHHEDEGRVGGGENIGKQNEEEAVARLEEMKKSIEAKITLRQSNLNP
ERPDSGFLRTLDSSIRRNTAVIKKLKQINEEQREGLLDDLRSVNLSKFVSEAVTSICDAK
LRSSDIQSAVQICSLLHQRYKDFSPSLVQGLLKVFFPGKSGDDSDTDRNQKAMKKRSTLK
LLLELYFVGVIEDSAIFVSIIKDLTSIEHLKDRDTTQTNLSLLASFARQGRIFLGLPLSG
QEVYEEFLKGLNITSDQKKIFRKALHAYYEAASELLQTEHTSLRQLEHENAKILNAKGEL
SDENVASYEKLRKSYDQLYRNISSLAEALDMQPPVMPEDGHTTRVTSGDDASSNSTGKDS
SVLEAIWDDEDTRSFYECLPDLRAFVPAVLLGEAESKMNEQSVKTQEQSTELAPESDQVQ
QTAPDSAEISTDSGASQEGRSTEKGKEKEEKEKDKSKDPEKEKGKEKDADKKGDTEKEKL
KSIEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKASRKKLVRALFNVPRTSLELLPY
YSRMVATLSTCMKDVSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPA
GLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLD
PRHSTLVENAYYLCKPPERSARIAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWS
ECEPYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRVGLELNDYG
MQQRRLAHMRFLGELYNYEHVDSSVIFETLYLILVFGHGSPEQDLLDPPEDCFRMRMVIT
LLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMTRYSSI
EEVTLALVELEEHERTLPSDKTSSEKHSDSEIRSSFNSISANGQSAVNGNEGNGRLHDGL
GDSDSDSGSGTLDPEGRDEEELDDENHDEECDTDEEDDDGGGPASDEDEVHVRQKVMEVD
PLEAATFEQELKAVMQESMDQRRQELRGRPTLNMMIPMNVFEGSTRGVGGESGDEALDEE
GGGIKDVQVKVLVKRGSKQQTRQMYIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDR
EEEELNGLGTQTLNHMQGSGSRGSTRGHLWEGSSGRGGTRHRHYSGGGIFYNRKK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggtgtcagtttgtgaagtaaagggaaagatggatcaccatgaggatgaaggg
cgtgttggtggtggtgaaaatattggaaagcagaatgaggaggaggctgttgctcgactt
gaggagatgaagaaatcaattgaagcaaaaataacacttcggcagagcaatttgaatcct
gaaaggcctgactcaggatttctgaggacattggattctagtattaggcgtaacacagca
gtcattaaaaaactgaagcagataaatgaagagcagcgtgaagggctgctggatgacttg
agaagtgttaatctaagcaaatttgtcagtgaagctgtgacttccatttgtgatgccaaa
cttagaagttcagatatacaatcagcagttcagatctgctctttgcttcatcaaagatac
aaagacttctccccgagccttgttcaagggcttttgaaagtcttctttcctggaaaatca
ggggatgactcagatacggataggaatcaaaaggctatgaagaagcgcagtactctgaag
ctacttttggaactttactttgttggagttatagaagacagtgctatttttgtaagcatt
atcaaagatcttaccagcattgaacacttgaaggatcgggatactactcagacaaattta
tctctccttgctagttttgctcgacagggaagaatatttcttgggcttccactctctggg
caagaggtgtatgaagagtttcttaaaggtcttaatatcacatcagatcaaaagaaaatt
ttcaggaaggcattacatgcatattatgaagctgcatcagaacttcttcagactgagcat
acttctcttcgtcaattggagcatgaaaatgcaaaaattctcaatgccaagggagagcta
agtgatgaaaatgtagcatcatatgaaaaactgagaaaatcttatgaccagttgtaccgc
aatatctcatccttagcagaggcacttgatatgcagcctccagtaatgccagaggatggt
cacacaactagggttacttctggagacgatgcttcctccaattctactgggaaggattct
tctgttcttgaagccatatgggatgatgaagatactaggtctttctatgaatgcttgcca
gatctcagagcatttgttcccgctgtattgttgggggaagcagaatccaagatgaatgag
caatctgtgaagacacaagagcaatccactgaattggcacctgaatcagaccaagttcaa
caaactgccccagactctgcagagatttctacagattctggtgcttcacaggagggcaga
agcacagaaaaagggaaggaaaaggaagaaaaggagaaggataagagtaaagaccctgaa
aaggagaaagggaaagagaaagatgctgacaagaaaggagacactgaaaaagagaaatta
aaaagtattgaagggacaaatctggatgccttattgcagagacttccaggttgtgtgagc
cgtgatcttatcgatcaattgactgtagaattttgctacttgaattcaaaagcaagtcga
aaaaagcttgtgagggcattgtttaatgttccaaggacttcattggaactgttgccgtac
tattcacgcatggttgccacattatcaacatgtatgaaagatgtttcttccatgctccta
caaatgttagaagaggagtttaatttcttaattaataaaaaggatcaaatgaacattgaa
acaaagatcagaaacattaggtttatcggggaactatgcaagtttaaaattgcaccagct
ggccttgtttttagttgtttgaaggcttgtttagatgatttcagtcatcataacattgat
gttgcttgcaatcttttggagacctgtggtcgttttctgtatcggtcgcctgaaactact
gttcgaatggctaatatgctggagatattgatgcgtctgaaaaatgtcaaaaatttggat
cctcggcatagcacccttgtagaaaatgcttactatttgtgcaaaccacccgagcggtct
gctcggattgctaaagttcgccctcctctgcatcagtacataagaaaattgctattttca
gatcttgacaaatctacaattgagcatgtgctgaggcagcttcgtaaattaccatggagt
gaatgtgaaccctatcttttaaaatgcttcatgaaggttcacagggggaaatatggccag
attcacttgatagcttctctcactgctggcttaagtcgctatcatgatgaatttgctgtg
gctgttgttgatgaggttttggaagagattcgggttggcctggaattaaatgactatggt
atgcagcagagacgcttagcccatatgcgatttttaggagagctatacaactatgagcat
gtggattcgtctgttatttttgagacgctgtatttgattcttgtctttggccatggctca
ccagagcaagatctactagacccaccggaggattgtttccgcatgaggatggttattact
ctccttgagacctgtgggcactactttgatcgaggctcttctaaaaggaaacttgatcga
tttttaatacactttcaaagatatatcttgagcaaaggtgctttaccactggatattgaa
tttgatttacaggatttatttgctgatttacgtcccaatatgactcgatactcatctatt
gaagaagttactttagctctggtggaacttgaggagcatgaacgtactctcccatctgac
aaaacaagtagtgagaagcactctgacagtgaaataaggagttctttcaactctatttca
gcaaatggacagagtgctgtgaatggtaacgagggaaatggtaggttgcatgatggcctt
ggagacagtgacagtgattctggaagcgggactcttgatccagaggggcgtgatgaagaa
gaactggatgatgagaatcatgatgaagaatgtgatactgacgaggaggatgacgatggg
ggtggacctgcctcagatgaggatgaagtccatgtgaggcagaaggtgatggaagttgac
cctcttgaagcagcaacttttgagcaagaactaaaggctgtcatgcaggaaagcatggat
cagcgcaggcaagaactacgtggtcgacccacattaaatatgatgataccaatgaacgtg
tttgaaggatcaaccaggggggttggtggtgaaagtggtgatgaagcattggatgaggag
ggtggaggaattaaggacgtccaggtaaaagttcttgtgaagcgtgggagcaagcaacag
actaggcagatgtacatccctcgggattgctctcttgtacagagcacaaaacagaaagaa
gcagctgagcttgaggagaaacaagacatcaaaaggctagttttagaatataatgataga
gaggaggaggaactgaatgggttgggaacccaaacattgaaccatatgcagggtagcggc
agtagaggttccacccgaggtcacttgtgggaaggaagcagtgggagggggggaacacgt
catcggcattattccggtggtggaatcttctacaacagaaaaaagtga
DBGET
integrated database retrieval system
