Cannabis sativa (hemp): 115706471
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Entry
115706471 CDS
T08987
Name
(RefSeq) ATP-dependent helicase BRM
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115706471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115706471
03036 Chromosome and associated proteins [BR:
csav03036
]
115706471
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115706471
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
115706471
Chromatin remodeling factors
BAF complex
115706471
PBAF complex
115706471
GBAF(ncBAF) complex
115706471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
115706471
NCBI-ProteinID:
XP_030489988
LinkDB
All DBs
Position
1:complement(36555295..36567061)
Genome browser
AA seq
2277 aa
AA seq
DB search
MQSGGGAAGGGPSRNPGGPAGRAPSTSSAASPSSSSSAVSTPHLGFDAIQQHQQHQHQHQ
QIGSRQPLQQQLLRKPEGNESLLAYQAGNLQGALGVGNFTPHGAMPLSQQSRKFFELAQQ
QGSSQEGHNRSQGPDQQVMNPVHQAYLQYAFQAAQQKSALAMQSQQQAKMGMLGPPSGKD
QDTRIGNMKMQELMSIQAGNQAQASSSKSEHFGRGEKQMEQGQPPASDQRSEPKPLSKPA
SMGQLMHGNVVRPMQGPQSQQNVQNMANNQLAMAAQLQAVQAWAVEHNIDLSVPGNVNLV
AQLIPLVQSRLAGQQKANESNMGAQSSPVPVSKQQVTSPQVASENSPHANSSSDASGQSG
SAKAKQAVSSGPFGSSSNAGSVNNSNNIPMQQFPVHGRENQVAFRQPAVTGNGIPMQSQG
NINQGVDQSLHAKNPLSSPESMQMQYSRPVNRSSPQASVSMNERASGTPVQAQGGPSTHA
SQQRPGPSGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDLQQQPQQQNNA
VGVSVQDKSAGKVVADRVRHMESSEKDTQAAAAMNGQTVLKEEPFTRDEKSNAAAVHAQG
TSAMVKEPPVPVVSSGKEEQQPTVFSAKSDHEVERGTSKALVRSDSVDRGKAVAAHVPVS
DAMQAKKPTQASTAPQPKDVGSARKYHGPLFDFPFFTRKHDSLGPGTMNSNNNNNLTLAY
DVKDLLFEEGVEVLNKKRTENIKKIGGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDIQA
RLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQKALRDKQLKSIFLWRKK
LLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQ
QTSIDGDAAERYAVLSSFLTQTEDYLHKLGSKITAAKNQQEVEEAANAAAAAARHQGLSE
EEVRAAAACAGEEVLIRNRFMEMNAPKDSSSVSKYYSLAHAVNERVIRQPSMLRKGTLRD
YQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV
NWKSELHTWLPSVSCIYYVGSKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKIDW
KYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR
KAFHDWFSKPFQREAPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK
VSIILKCRMSAIQSAIYDWIKSTGTIRVDPEDERRRVQKNPIYTAKVYKTLNNRCMELRK
TCNHPLLNYPYYSDLSKEFIVRSCGKLWIMDRILIKLQRTGHRVLLFSTMTKLLDILEEY
LQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVIIYD
PDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKIPSHQKEDELRNGGTVDSEDDLAGK
DRYVGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH
DVPSLQEVNRMIARSEEEVELFDQMDEEFDWIEEMTSYDQVPKWLRVGTREVNTTVANLS
KRPSKNILFGGNVGVGSNEVGSDSSPKTERRRGRPKGKKHPNYKELDDDNGEYSEASSDE
RNGYSLHEEEGEIGEFEDDEFGGAAAAPECNKDQVEEDGPTCDGVFEYPRTSEGVRVNHT
VEEAGSSGSSSDTRKVTRIVSPVSSQKFGSLSALDSRPGSASKRLTDELEEGEIAVSGDS
HMDHQQSGSWIHEREEAEDEQVLQPKIKRKRSLRIRPRHNVERPEEKSSNETSSLHRGDL
SLQRGDSSLLPFQDHKNVTQLRGDPDIKSYADSNSLRHEQNESLKTRRNLPSRRIANTAK
LHASPKSSPKSGSSRLNNMSASVDDATEHLRDNWDGKVGNSSGTTVLGSKMPEIIQRRCK
NVISKLQRRIDKEGPQIVPLLTDLWKRIENTGYTTGSGNNLLDLRKIDQRIERLEYNGVM
ELVFDVQSMLRSAMHYYAFSHEVRTEARKVHDLFFDILKIAFHDTEFREARSALSFSSPV
STTAAPSPRPAAAVLSKRQKMINEVEPDPSPLQKPQQRGPVYNSEESRMRSLVSQKELRH
GSGSGREQIQQDDSPRPAHPGDLVICKKKRKDREKSLAKVRTGSVGPVSPPNMTRGIKSP
GSVSVTRDTRLTQQATHSPGWANQSAQPSNGGGGSVGWANPVKRLRTDSGKRRPSHL
NT seq
6834 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggtggtggagctgctggaggaggtcccagccggaatccgggaggtccggct
ggtcgggcaccatcgacatcttcggctgcatcgccttcttcttcgtcttctgccgtgtcg
actccgcacttgggtttcgatgcaattcagcagcatcagcaacatcaacatcaacatcag
cagataggttctaggcagccattacaacaacagctactaagaaaacctgagggcaatgaa
tccctgctagcataccaagctggcaatctccaaggagctttgggagtaggcaattttaca
cctcatggtgcaatgccgctgtctcaacagtcgaggaaattcttcgaattggctcagcaa
cagggttcttcccaagaaggtcacaataggagccaagggcccgaccaacaagtaatgaat
cccgtccatcaagcttatcttcagtatgcttttcaggcagcgcaacagaaatctgctttg
gcaatgcagtcacaacagcaagctaaaatgggaatgttaggccctccatctggaaaggat
caggacacacgaattggaaatatgaaaatgcaagaacttatgtctattcaggctggtaat
caggcacaagcatcttcatccaagtctgagcattttggtcgtggagaaaaacagatggag
caaggacagccaccagcctctgaccagaggagtgaacctaagccattgtcgaaacctgcc
agtatgggccaattaatgcatggaaatgtcgttaggcccatgcaggggccgcagtctcag
caaaatgtacaaaacatggcaaacaaccagctagcaatggctgctcagctgcaagcagtg
caggcatgggctgttgaacataacattgatctttcagtgcctggaaatgtcaatttggtt
gcacagctcattccacttgtgcagtctaggttggctggacagcagaaagcaaatgaaagc
aatatgggagcacaatcatcacctgttccagtgtcaaagcagcaggttacttctccgcaa
gttgctagtgagaattctcctcatgctaattcatccagtgatgcttctgggcagtctggc
tcagcaaaagcaaagcaggcagtatcatctggaccttttggctcttcttcaaatgctggt
agtgttaataatagtaacaacattccaatgcagcagtttcctgttcatggtagagagaat
caagtggcatttagacagcctgctgtaactggtaatggaattcctatgcaatcacaagga
aacattaaccaaggtgttgatcaatcccttcatgctaaaaatccattaagtagcccagaa
agtatgcaaatgcaatatagtaggccagtgaatcgatcctctcctcaagcttctgtttct
atgaatgagagagcttctggaactccagtgcaagcacaaggtggaccatctactcacgcg
tcacaacaacgacctggtccttctgggttcaccaaacagcaactgcacgttctcaaagca
caaatactggcatttcggcgattgaagaaaggagaaggtacactcccccaagagcttctt
agagctattgctccacctccacttgacttgcagcagcagccacagcagcaaaataatgcg
gtaggagtaagcgtgcaggataaatctgctgggaaggttgtagcagaccgtgtaagacat
atggagtccagtgaaaaggatacgcaggcagctgcagctatgaatgggcagactgtttta
aaggaggaacctttcacaagagatgagaaatcaaatgcagcagcagttcatgcacaaggt
acgtcagctatggttaaggaacctcccgtacctgtggtttcttcgggaaaagaagagcag
caacccactgtcttctctgctaagtcagaccacgaagttgaacgtggtacctcaaaagct
cttgttagaagtgattcagtggatagaggaaaggcggttgcagctcatgttcctgtatct
gatgcaatgcaagctaaaaagcccacacaagcaagcactgctccccaaccaaaagatgtt
ggttctgctagaaagtaccatggaccactatttgatttcccttttttcactaggaaacat
gactcgttgggtccaggtacgatgaatagcaacaataataacaatctaacacttgcatat
gatgtgaaagatcttctttttgaggaaggtgtggaagtgcttaacaagaagagaacagaa
aatataaagaaaattggtggtttacttgctgttaatttggagaggaaaaggattagacca
gaccttgttctgcggttgcaaattgaagagaagaagcttcgacttttagatatacaggca
cgtttgagagacgaaatcgatcagcagcagcaagagataatggctatgcctgataggcct
tatcggaagtttgtcagactttgtgagcgtcaacgcatggagcttgctagacaagtacaa
gcctctcaaaaagcccttagagataaacaacttaaatccatctttctttggcgtaagaaa
cttcttgaggctcactgggctattcgtgatgcacggactgctcggaacaggggggttgcc
aaatatcatgaaaagatgttgagggagttctcaaaaaggaaggatgatgatcgaaacaaa
aggatggaagcattgaagaataatgatgttgaaaggtatagggagatgttgcttgagcaa
cagaccagcattgacggtgatgctgcagagagatatgcagttctttcatcatttttgact
cagacagaagattaccttcataaactgggaagtaaaataacagctgccaagaatcaacaa
gaagtggaggaggcggctaatgctgctgcagctgctgcacgacatcagggtctctcggaa
gaagaagttagagcagcagcagcatgtgctggggaggaagtattgataagaaatcgtttt
atggaaatgaatgcacctaaggatagctcctccgttagcaagtattatagtcttgcacat
gctgtgaatgaaagagtcataaggcaaccctctatgctgcgcaaaggaacattaagagac
tatcagcttgttgggttgcaatggatgctttcattatataacaacaagttaaacggaatc
ttagcagatgaaatgggtctcgggaagactgtacaggtaatggcattaattgcttactta
atggagttcaaagggaattatgggccacatctcataattgttcctaatgctgttttggta
aactggaagagtgagctgcatacctggttgccatctgtgtcttgcatatattatgttggt
agcaaagatcagagatcaaaattattttcccaggaggtctgtgccatgaaattcaatgta
cttgtgacaacttatgagttcatcatgtatgatcgctcaaagctttctaaaatagattgg
aagtacattataattgatgaagcacagaggatgaaagatagggaatcagttctagctcgc
gatcttgataggtatcgttgtcagaggcgtcttcttcttactgggacaccattacagaac
gatttgaaggaattgtggtcacttttgaatctacttctccctgaagtgtttgataatagg
aaggcatttcatgattggttctcaaagccatttcaaagagaagctcctacacagaatgca
gaagatgactggttagagactgaaaagaaagtcataatcatccatcggctccaccaaatt
ttagaaccattcatgctccggcggcgtgttgaggatgtcgagggttcccttcccccgaag
gtttcaattatattaaaatgtagaatgtcggctattcagagtgctatttatgattggatt
aaatctactggtactattcgagttgatccagaagatgagaggcggagggttcaaaaaaat
ccaatttatacagctaaggtgtataaaacgttaaataacaggtgtatggaactacgtaaa
acctgcaatcatccattgcttaattatccatattacagtgacttatccaaggaattcatt
gtaagatcttgtggaaaactgtggattatggatagaatccttatcaaacttcagagaaca
ggacatcgagtacttctcttcagtaccatgacaaaactccttgatatattggaggaatac
ttgcagtggcgaagacttgtatatagacgaattgatggcacaactagtttagaagatcgt
gaatcagccatagtggactttaatagccctggttcagattgctttatcttcttgcttagt
attcgtgctgctggtcgagggcttaatcttcagtctgctgatacagtaatcatatatgat
cctgacccaaaccctaaaaatgaagaacaggcagtagccagggcccatcgtattggacaa
acaagagaagtcaaagtcatatatatggaagcagttgttgacaaaattcctagccatcaa
aaagaggatgaactgagaaatggaggtacagttgattcagaggatgaccttgccggtaag
gatcggtatgtgggatccattgagagcctcattagaaacaacattcagcagtataagatt
gacatggctgatgaggttataaatgctggtcgctttgaccagagaaccactcatgaagag
agacgcatgacattggagacattattgcatgacgaggagagatatcaagaaaccgttcat
gatgttccctccttgcaagaggttaatcgcatgatagctagaagtgaagaagaagttgaa
ttgttcgatcaaatggatgaagaatttgattggattgaggaaatgactagttatgaccag
gtccctaaatggcttcgtgttggtacacgggaagttaatacaaccgttgcaaatttatca
aaaagaccatcaaagaacattttgtttggtgggaacgttggagtgggatccaatgaagtg
ggctctgattcatccccaaaaactgagaggaggaggggacgaccgaaggggaaaaagcat
ccaaattacaaggaattagatgatgacaatggtgaatactcggaagcaagttctgacgag
agaaatggatattctttgcatgaagaagaaggagaaattggggagtttgaggatgatgaa
tttggtggtgctgctgcggcacccgaatgtaataaagaccaagtagaagaagatggtcca
acttgtgatggtgtatttgagtatcctcgaacttcagaaggtgttagagttaaccataca
gtagaagaagctggctcctcagggtcatcttcagacactcgaaaagtgacaaggatagtg
tctccagtttcctcgcagaaatttgggtcactatcagcgttagatagtagacccggttct
gcatcaaaaagacttacagatgaattagaggagggtgaaattgctgtatctggagattca
cacatggatcaccaacaatctggaagttggattcatgaacgtgaggaggctgaagatgaa
caggttttacagcccaagataaagaggaaacgtagtcttcgtattcgcccccgtcacaat
gtggaaaggccagaagagaaatccagtaatgagacatcttccctacaccgtggagatttg
tctcttcaacgtggagattcatcactgttgccatttcaggaccacaagaatgtgacacag
ttacgaggtgacccggacatcaaatcctatgcagattccaattctttgaggcatgaacaa
aatgaatccttgaaaactaggcggaatctgccttcaaggagaatagcaaatacagcaaaa
ttgcatgcctcaccaaaatcttctcccaagtctggtagtagcagattgaataacatgtct
gcttctgtagatgatgctactgagcatcttagagacaattgggatggaaaagttggaaat
tctagcggtactactgttttgggctctaagatgcctgagatcatccagagaaggtgcaag
aatgtgataagcaagcttcaaaggagaatagataaggaaggacctcaaattgtacctttg
cttacagatttgtggaagcggattgagaatactggctacacaactggatctgggaataat
cttttggatttaagaaagattgatcagcgtatagagaggttagagtataacggtgttatg
gagctggtatttgatgtgcagtctatgttgagaagtgcaatgcattattatgcgttctca
catgaggtacgaactgaagccaggaaagtacatgatttgttcttcgatatcttgaaaatt
gcattccatgacacagaatttcgagaagctagaagtgctctttcattttctagcccagtt
tccacaactgctgctccttcacctaggccagctgctgctgttttaagcaagagacagaag
atgataaatgaggtggaacctgacccaagccccctacagaagccgcagcaaaggggacct
gtatacaatagtgaagaatccaggatgagaagccttgtgtcacagaaagaactgagacat
ggtagtggcagtggcagagagcaaattcagcaagatgattctcctcgtcctgctcatcct
ggggatctcgttatttgcaagaagaaaagaaaagacagggaaaagtctctggcgaaggtt
aggactgggtcggttggccctgtttcaccccccaacatgactcgtggtattaaaagcccc
ggttctgtttccgttaccagagacacaagactaactcaacaagccactcattctccaggg
tgggctaaccagtctgctcaaccttcaaatgggggtggagggtctgttggttgggcaaac
ccagttaagaggttgaggacagattctgggaagaggaggccaagccatctatga
DBGET
integrated database retrieval system