Cannabis sativa (hemp): 115706522
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Entry
115706522 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115706522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115706522
03036 Chromosome and associated proteins [BR:
csav03036
]
115706522
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115706522
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115706522
mRNA degradation factors
5'-3' decay
Decapping complex
115706522
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115706522
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
Mdt30
Slr1339
DUF3984
Motif
Other DBs
NCBI-GeneID:
115706522
NCBI-ProteinID:
XP_030490053
LinkDB
All DBs
Position
1:complement(37046485..37051514)
Genome browser
AA seq
514 aa
AA seq
DB search
MNNNNNNRGRYPPGIGAGRGGPMNANPAFQSRGPQQQYVQRGLVQNQPQYFHHQQQQHHQ
QQQQQYHQQQQQQQQQQQQQQQWLRRGQLGGVADSSADEVEKTVQSEAVDSSSQDWKARL
KIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI
LARAKNGTGKTAAFCIPALEKIDQDLNAIQVVILVPTRELALQTSQVCKELGKHLNIQVM
VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCAMLVMDEADKLLSPEFQ
PSIEQLIGFLPGNRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVE
ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF
HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNL
ITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataataataataatagagggaggtaccctccggggattggtgccggtcgaggc
gggcccatgaacgcaaatccggcgtttcagtctaggggacctcagcagcagtacgtgcag
agaggtttggttcagaatcaaccccagtattttcatcaccagcaacaacagcaccaccag
caacagcagcagcaatatcatcaacagcagcagcagcagcagcagcaacaacaacaacaa
cagcaatggctgaggagaggtcaattgggtggagttgctgattccagtgctgacgaggtc
gagaagaccgtacagtcggaggctgtggactccagttctcaagattggaaggcaagattg
aaaataccaccagctgatacccgctacagaacagaggatgtgactgcaactaaaggaaat
gagttcgaggactatttcctgaaacgtgaattgctgatgggaatatatgagaaagggttt
gaaagaccatcccctattcaggaagagagtataccaattgctcttactggtagtgatata
cttgctagagccaaaaatgggactggaaagacagctgcattttgcatccctgccttggaa
aagattgatcaagatttaaatgcaatacaagttgtaatacttgtcccaacacgtgagctg
gctcttcaaacatcacaagtctgtaaggagctcgggaagcatttgaatattcaagttatg
gttacaactggtggtactagcttaaaggatgatatcatgcgtttatatcaacctgttcat
ttgcttgttggaacacctggaagaattttagatctttcgaagaagggtgtttgcatcttg
aaagactgcgctatgcttgttatggatgaggctgataagctactgtcaccagagtttcag
ccatcaattgaacagctgattgggtttttgcctggaaacaggcaaattttaatgttttca
gctacattccctgtcactgttaaggatttcaaggatagatatcttcaaaagccttatatt
attaaccttatggatgagcttactctaaagggtattacacagttttatgcatttgttgaa
gaacgacagaaagttcactgcctgaacactcttttctccaagcttcaaataaaccagtca
attatcttctgcaattctgtaaatcgagtagaactgctggccaagaaaattacagaactt
ggctattcttgtttttatattcatgcaaagatgctccaagatcaccgtaacagagtattt
catgacttccgtaatggtgcatgcaggaatcttgtttgtactgatttatttactagagga
atagacatacaagcagtcaatgttgttattaactttgactttcccaagaactcggaaaca
tatctgcacagggttggtcgatcaggaagatttggacatcttggtttagctgtgaatttg
atcacatatgaagaccgcttcaacttgtataggattgagcaggaacttggcactgagata
aagcaaattccaccgcacattgatcaggcaatttattgccgataa
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