KEGG   Cannabis sativa (hemp): 115706548
Entry
115706548         CDS       T08987                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03030  DNA replication
csav03410  Base excision repair
csav03420  Nucleotide excision repair
csav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115706548
   03410 Base excision repair
    115706548
   03420 Nucleotide excision repair
    115706548
   03430 Mismatch repair
    115706548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csav03032]
    115706548
   03036 Chromosome and associated proteins [BR:csav03036]
    115706548
   03400 DNA repair and recombination proteins [BR:csav03400]
    115706548
DNA replication proteins [BR:csav03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    115706548
  DNA Replication Termination Factors
   ELG1-RFC complex
    115706548
Chromosome and associated proteins [BR:csav03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    115706548
DNA repair and recombination proteins [BR:csav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     115706548
  Check point factors
   HRAD17(Rad24)-RFC complex
    115706548
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 Mg_chelatase AAA_5 AAA_11 AAA_14 AAA_24 AAA_assoc_2 SLFN-g3_helicase AAA_2 ResIII PhoH nSTAND3 AAA_30 AAA_19 AAA_28 CPG4 AAA_7 RNA_helicase AAA_25 Parvo_NS1 NPHP3_N MCM bpMoxR IstB_IS21 DNAX_ATPase_lid DUF815 TIP49 AAA_18 NB-ARC
Other DBs
NCBI-GeneID: 115706548
NCBI-ProteinID: XP_030490093
LinkDB
Position
1:37153634..37164243
AA seq 342 aa
MATLMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSVQRQGGYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSRVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMT
SRVLYICNEEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISSRDLIGVSGVI
PLEVVEAFFTACKSGNFDLANKEVNNIIAEGYPVSQMLSQLFDMVVEAADVSDEQKSRIC
KKLGEADKCLVDGGDEYLQLLDVASNTMRALCNMPEEFSYSN
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggctacattgatgcaaagctctcagccatgggtcgagaaatatcgacctaagcaagta
aaagacgtggctcaccaggatgaggtggtccgggtcctcaccaacaccctcgaaaccact
aattgtccccacatgctcttctatggccctcccggcaccggtaaaacgaccaccgctcta
gccattgctcaccagctttttggacctgaactatacaagtctagagtgctggagcttaat
gcaagtgatgaccgtggtatcaatgttgttcgaacaaaaatcaaagattttgctgctgtt
gctgtgggttctgtccaacgtcaagggggatacccttgtccaccttataagatcattatc
cttgatgaggctgattccatgactgaagatgctcagaatgcccttagacgtacgatggaa
acttactccagagtcacaaggttctttttcatatgtaattacatcagcaggatcatagag
cctcttgcgtctaggtgtgcaaagttcaggttcaagccactttcagaagaagtcatgact
agtcgtgtattgtacatttgcaatgaagaaggtctgaatttggattcagaggctctttca
actctaagttctatttcacaaggtgatctgcggcgggctattacatacttgcagtcagca
gctcgcttgtttggatcttcgatttcttccagggacctgattggtgtttctggggtcatt
ccacttgaggttgttgaggcttttttcacagcttgcaagagtggtaactttgatttggca
aataaggaagtcaataacattattgcggagggctatcccgtctctcagatgctttcacag
ttatttgacatggttgttgaagcagctgatgtatcagatgaacagaagtctagaatatgc
aagaaattgggcgaagcagataagtgtcttgttgacggtggggatgagtacttgcaactg
cttgatgtggctagcaacacaatgcgtgctctttgtaacatgccagaagaattctcttat
agcaattag

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