Cannabis sativa (hemp): 115706932
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Entry
115706932 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115706932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115706932
03009 Ribosome biogenesis [BR:
csav03009
]
115706932
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115706932
Spliceosome [BR:
csav03041
]
Complex A
U1 snRNP components
U1 related factors
115706932
Complex B
115706932
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Helicases
115706932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115706932
NCBI-ProteinID:
XP_030490571
LinkDB
All DBs
Position
1:complement(89001691..89005711)
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AA seq
499 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRRSDSGFGGSVRSSSSKKDYDGGESPKKFDLEGLSHFEKNFYVE
SPTVAAMSERDVEEYRLRREITVEGRDVPKPIKDFGDIGFPDYVLEEISKAGFVEPTPIQ
AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPIVLVLAPTRELAV
QIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESHHTNLRR
VTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLSRQFLYNPYKVI
IGSQDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM
DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE
DYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILEEAGQKISPELASMGRGAPPPLS
GHGGFRDRGRGFGGSRPWS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagtcggtccggggacccaacttcctaccgtgaccggagaagcgat
tcgggtttcgggggttcggtccggtcctcgtccagtaagaaagattatgacggtggtgag
tcaccaaaaaagtttgacttggaagggctgtctcatttcgagaagaacttttatgtggag
tcgccgactgtggcagcaatgtctgagagagacgttgaggagtatcgtctgaggagagaa
attacagtcgaaggccgtgatgtgccaaaacccattaaggattttggtgacattgggttc
ccggattatgttttggaagaaatttcaaaagctggttttgttgagcctacgcccattcaa
gctcaaggatggccaatggctctcaagggccgggatcttattggaattgctgaaactgga
tcaggaaagacacttgcctatctattgccggcaattgtccatgtcaatgcacagccaata
ctatctcctggagatggtcctattgtgctagtcttggctccaactcgtgaacttgctgtt
cagatacaacaagaggctaccaaatttggtgcatcttcaaagattaaaagcacctgcatt
tatggtggggttccaaagggaccccaagttcgtgacctccagaaaggggttgagattgta
attgccacacctgggaggttaattgatatgatggaatcacatcatacaaatttgcgaagg
gtcacatatcttgtcttagatgaggctgatcggatgctagacatgggatttgaccctcag
atacgaaaaattgtttctcagattcgccctgaccgtcaaacattgtactggagtgctacc
tggccaaaagaggttgaacaattgtccaggcagttcctttataatccctacaaagtaatt
ataggatcacaagatttgaaggcaaatcatgcgattcgccaacatgttgatattgtttct
gaaaatcagaaatataacaaattagtgaagttgttggaggatattatggatgggagcaga
atactaattttcatggacaccaagaaaggatgtgatcagatcacccgacaacttagaatg
gatggatggcctgccctttctattcatggagataaaagtcaagcagaaagagattgggtt
ctctccgagtttaaagctggcaagagcccgataatgactgcaactgatgttgcagctcgt
ggtctagatgtgaaggatgtgaaatatgttataaattatgattttccgggatcccttgag
gactatgttcaccgcattggtcgaactggaagagcaggagctaaaggaacagcatacact
ttctttacagctgctaatgccagatttgcaaaggatcttattaacatacttgaggaagct
ggacagaagatcagtccagaattagcatcgatggggcgtggtgcacctcctcccctttca
ggtcatggtggctttcgagatcgcggtagaggttttggtggaagccgcccgtggagctaa
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