Cannabis sativa (hemp): 115707373
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Entry
115707373 CDS
T08987
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115707373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115707373
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
115707373
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Zn_ribbon_6
DUF7573
Motif
Other DBs
NCBI-GeneID:
115707373
NCBI-ProteinID:
XP_030491179
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All DBs
Position
1:44407956..44412870
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AA seq
536 aa
AA seq
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MSMDLILKPTCSGCGSPTDLYGSNCKHLTLCLTCGKKKAESRATCPECGATVTRLIREYN
VRASTSNDKNYFIGRFVTGLPSFSKKKNAENRWSLQKDGLQGRQLTDTLREKYKNKPWLL
EDETGQFQFQGHLEGAQSATYYLLMLQGKEFSAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYQRWMMKAANNGPAAFGEVDKFDDKESGAAGGRGRKKTSGDEGEGNVSDKG
DEDEEEEAARKNRLGLNKRAGEDDDDEGQRGGDLDLDDDDVEKGDDWEHEEIFTDDDEAV
GNDPEEREDLAPEVPAPPEIKQDEDDEDDDNEEEGGLSKSGKELKKLLGRTSGLNDSDAD
DDDDDEDMDDDINVSPTVATKQKDGPKEEPAEISPVKSTPSASAKGAPSNSKSAKGKRKL
NGDDAKPSNGAPPKKVKTENEQKSSEPAAASKSNVPSKGAPAVSKASGSSSAGPVTEEEI
RAVLVQKTPVTTQDLVAKFKARLKSPEDKSAFAEILRRISKIQKTNGSNFVVLREK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggatctgatactgaagccaacgtgtagtggatgtggatcgccgacggatttg
tacggaagtaattgcaagcacctgactttgtgcttgacatgtgggaagaaaaaggctgag
agccgcgccacatgccctgagtgtggcgccactgttacccgtttaataagagaatataat
gttcgagccagtaccagcaatgacaagaactactttattggtagatttgtgactggcttg
cccagcttttcaaaaaagaaaaacgctgaaaacagatggtctctccaaaaagatggattg
cagggacgccagcttactgataccttgcgggagaagtacaagaataaaccttggcttttg
gaggatgaaacagggcaatttcaattccagggtcatcttgaaggtgcacaatcagcaact
tactacctgctgatgttgcaggggaaagagttttctgctattcctgctggctcttggtac
aattttaacaaggttgcacagtataagcaacttactctggaggaagcagaagagaagatg
aaaaataggaaaaagactgctgatggctatcaaagatggatgatgaaagcagcaaacaat
ggacctgccgcatttggtgaagtggataagtttgacgacaaggaaagtggtgcggctggt
gggagggggcgaaagaaaacttcaggtgatgagggtgaaggaaatgtctcagacaaagga
gatgaggatgaagaagaggaagcagccaggaagaataggcttggtttgaataaaagagct
ggcgaggatgatgatgatgaaggtcaaaggggaggtgatcttgatttggatgatgatgat
gtagagaaaggtgatgattgggagcatgaagaaattttcaccgatgatgatgaagcagtt
ggtaatgatccagaggaaagggaggatctggcacctgaagttccagctcccccagaaatt
aagcaggatgaagatgatgaggatgatgataatgaagaagagggtggactaagtaaatca
gggaaagagttgaagaagctgctagggcggactagtggcctgaatgattcggatgcagat
gatgatgacgatgatgaggatatggacgatgacattaatgtctcacctacggtggctaca
aagcagaaggatggacctaaagaagaacctgctgagattagtcccgtaaaatcaacacct
tctgcctccgctaaaggagccccatcaaactctaagtctgccaaaggaaagagaaaacta
aatggtgatgatgccaaaccatctaacggtgcacccccaaagaaggtgaagacagaaaat
gaacaaaaatcttctgaacctgcagctgcttctaaaagtaatgtgccttcaaaaggcgca
ccggcagtctctaaagccagtggatcatcttctgccggacctgttactgaagaagaaatt
agggctgttttagtgcagaaaacaccagtgacaactcaggatcttgttgccaaattcaaa
gcgagactcaaatctcctgaggataaaagtgcttttgcggaaattcttaggagaatttct
aagatacaaaagaccaatggatctaatttcgttgtgctgagggagaagtga
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