Cannabis sativa (hemp): 115707487
Help
Entry
115707487 CDS
T08987
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115707487
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
115707487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_16
TPR_14
TPR_17
TPR_CcmH_CycH
TPR_6
TPR_11
TPR_7
TPR_9
TPR_10
ANAPC3
ARM_TT21_5th
ARM_TT21_C
Fis1_TPR_C
NatA_aux_su
UBA_N4BP1
DUF6584
Motif
Other DBs
NCBI-GeneID:
115707487
NCBI-ProteinID:
XP_030491326
LinkDB
All DBs
Position
1:complement(21176299..21186018)
Genome browser
AA seq
1082 aa
AA seq
DB search
MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR
QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKHREKEEHFILATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGEVEQAFSAFKIVLDGDRDNVPALLGQACVQFNRGRFSD
SLDLYKRALLVYPNCPAAVRLGIGLCRYKLGQLEKARQAFLRVLQLDPENVEALVALAIM
DLNTNEANGIRKGMEKMQRAFDVYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVSNH
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEVNKPHEFVFPYYGLGQVQLKLGDFKS
ALSNFEKVLEVYPDNCETLKVLGHIYFQLGQTEKAHEFMRKATKIDPRDAQAFLDLGELL
ISSDPVAALDALKTARMLLKKGGQETPIEVLNNLGVLHFERGEFELAEQTFREALGDGIW
LAFMDGKEKSPPVDASASTLQFKDTHFFQQLENEGRVVDLPWNKVTALFNMARLFEQLHN
SETASTLYRLILFKYPDYVDAYLRLAAIAKTRNNIQLSIELVNDALKVNGKCPNVLSMLG
DLELKNDDWVKAKETLRAASEATAGKDSYDTLSLGNWNYFAAVRNEKRNPKLEATHLEKA
KELYTKVLAQHSANLYAANGAGVVYAEKGHFDVSKDIFTQVQEAASGSIFVQMPDVWINI
AHVYFAQGNFSLAVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQDCKKTLLRAIHLA
PSNYALRFDAGVVMQKFSALTLQKEKRTADEVRLTVSELGNAVRVFKQLSASAASNLHFY
GFDEKKIDTHVEYCKHLLEAARVHLKNAEHEEQKNRHKQEALRQMALAEEARRKAEEQRK
FQLERRMREDELKQVRQQEEHFERVKEQWKSSTSSKRRDRTEVDDEEGGHSEKKRRKGGK
RRKKDKSSRSRYEADDAEAEMVDDQEEPEYDDTKVNYGEPAQTNDHEDYAEENAHDPLAA
AGLEDSDAEEEVAPNSNASRRRRAWSESDDDGQLERPEMQGSDGEIKEDDKVGEEGEIND
ED
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtgtacataccagttcagaactcggaggaggaagtgagagtggttctcgat
cagctcccgagggacgcttctgatattctagacatcctcaaggccgagcaagcccctctt
gatctatggctcatcatcgcgagggagtactttaagcaaggaaaacttgaacagttccgc
caaattttggaggaagggtccagtcctgaaattgatgagtactatgctgatgttagatac
gagagaattgcaatcttaaatgctttaggggcttactatagttaccttggaaaaattgag
actaagcatagagaaaaggaggagcacttcattttggcaacccaatactacaataaagcg
tcaagaattgacatgcacgagccttctacttgggttggaaaaggtcagcttttattggcc
aagggtgaagtagaacaagcattttctgcattcaagattgtattggatggagaccgtgat
aatgttcctgctctcttgggtcaagcatgtgttcagttcaaccgtggacgcttttctgat
tccttggatttgtacaagagggccctgctagtatatcccaattgtcctgctgctgtaaga
cttggcataggactgtgtcgttataagttgggtcagcttgaaaaagctcggcaggcattt
ctgagagttttgcagttagatccagaaaatgttgaggctcttgtagcattggcaattatg
gatttgaatacaaatgaagctaatggaattagaaaaggaatggagaaaatgcagagagct
tttgatgtatatccttactgtgcaatggcactaaattacttagcaaatcactttttcttc
acgggacaacattttttggtggagcaactcactgaaacagcgcttgctgttagcaaccat
ggaccgacaaagtcacactcttactataatttagcgcgatcataccatagcaagggggac
tatgaaaaggctggactgtattacatggcatctgtcaaggaagtcaataaaccccatgaa
tttgtatttccttattacggattgggccaggtgcaattgaagttgggagattttaaaagt
gcattgtcaaattttgaaaaggttttagaggtctaccctgataattgtgagacgttgaaa
gtacttgggcacatatatttccagcttggacagacagaaaaggcacatgaatttatgaga
aaggctacgaaaattgatccacgtgatgcccaggcatttcttgacctgggagaattattg
atttcatctgaccctgtagctgctctagacgccctaaaaactgctcgtatgcttttgaaa
aagggaggtcaagaaacacccattgaagtgctcaataatcttggagttcttcattttgaa
agaggagaatttgagcttgctgaacaaactttcagggaggcattgggtgatggaatatgg
cttgctttcatggatggtaaagaaaaatccccacctgttgatgctagtgcttccactctc
cagttcaaggacacacatttctttcagcagcttgagaatgaaggtcgtgttgtcgactta
ccttggaataaagttacggcactatttaatatggcaagattatttgagcagttacataac
tctgaaactgcaagcacgttgtaccgactaatcttgttcaagtatccagattacgtagat
gcttatctaaggcttgctgctattgcaaaaactcgaaacaatattcaattgagtattgaa
ctggtcaatgatgctctgaaggttaatggaaaatgcccaaatgtattatcgatgcttgga
gacttagaattgaagaatgatgattgggtcaaggcaaaagagactttgcgcgctgctagt
gaagcaacagcggggaaggattcctatgatacactttctctgggaaactggaactacttt
gcagcagttcgtaatgagaaaagaaatcctaagttggaagctacacatttagaaaaagct
aaggaactttacactaaggttctggctcaacattctgccaatttgtatgctgccaatggt
gctggagtggtatatgcagaaaagggtcactttgatgtttcaaaagatattttcacccag
gttcaagaagctgcaagtggaagcatttttgttcagatgccagatgtctggataaatata
gcacatgtttattttgctcagggaaatttttcgttggctgtaaaaatgtatcagaattgc
ctgaggaagtttttttataacacagactctcagattcttctctatttagctcgcactcac
tatgaagctgaacagtggcaagactgcaaaaagacacttctgagagccattcatttggca
ccttcaaattacgcactgaggtttgatgcgggtgttgtaatgcagaaattctctgccctg
acactacaaaaagaaaagagaacggcagatgaggtgcgcctaacagtttcagagcttgga
aatgctgttcgtgtatttaaacagttgtctgcttctgctgcttcaaaccttcacttttat
gggttcgatgaaaagaaaattgacactcatgttgagtactgtaagcacttacttgaagct
gcaagagttcacctaaaaaatgctgaacatgaagaacagaaaaaccggcataaacaagaa
gctcttcgacaaatggcattggctgaggaagcccgtcgcaaggctgaagaacaaaggaaa
tttcagttggaaaggagaatgcgagaggatgagctaaagcaggtgaggcaacaggaggag
cattttgaacgagtaaaggaacaatggaagagcagcacatcttctaagcgaagggataga
acagaggtcgatgatgaggagggtggtcatagtgagaagaaaaggagaaagggtggaaag
aggagaaagaaggacaagagctcaaggtcacgttatgaagcagatgatgcagaagcagag
atggtggatgatcaggaagaaccagagtatgatgacaccaaagtgaattatggggagcct
gctcagacaaatgaccatgaggattatgcagaagaaaacgcccacgatcctcttgcagca
gcagggctagaagattctgatgctgaggaagaggttgcacctaattcaaacgcaagtcgg
cggaggcgggcatggtcggagtctgatgatgacgggcaattagagagaccagagatgcag
gggagtgatggtgagatcaaagaagatgataaggttggggaagaaggtgaaattaacgac
gaggattga
DBGET
integrated database retrieval system
