Cannabis sativa (hemp): 115707602
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Entry
115707602 CDS
T08987
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03030
DNA replication
csav03420
Nucleotide excision repair
csav03430
Mismatch repair
csav03440
Homologous recombination
csav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115707602
03420 Nucleotide excision repair
115707602
03430 Mismatch repair
115707602
03440 Homologous recombination
115707602
03460 Fanconi anemia pathway
115707602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csav03000
]
115707602
03032 DNA replication proteins [BR:
csav03032
]
115707602
03400 DNA repair and recombination proteins [BR:
csav03400
]
115707602
Transcription factors [BR:
csav03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115707602
DNA replication proteins [BR:
csav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115707602
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115707602
MMR (mismatch excision repair)
115707602
DSBR (double strand breaks repair)
HR (homologous recombination)
115707602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Rsm22
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
115707602
NCBI-ProteinID:
XP_030491474
LinkDB
All DBs
Position
1:complement(19961177..19964822)
Genome browser
AA seq
621 aa
AA seq
DB search
MPVHLTPNAIPAIVGGDVNLKPLVQILDIKHIGSSQERYRLLISDAVSTQHAMLATQLND
RVKDGSIRNGSVIQLIEYLCSFVQNRQLVVILSMETIIPECDIIGNPKHFLEPDSTAQKI
QPNINLQQPARVSNNRYQPPPVANVQDFRPAVQPPYQPPSNYKSHGTILKNEAPARIIPI
AALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSEGGEIRVTCFNAVVDRFY
DVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCPDEDGSIPTQQFSFRPI
SDIESADSNTILDVIGIVISVNPSVPIMRKNGMETQRRILNLKDWSGRSVEITLWGDFCN
REGQKLQDMFDSGICPVLAVKAGKVNDFSGKSIGTISSTQLFINPDFPEAHSLRDWFDRG
GKDAVSQSISKDMVPGMPKNEIRKTISQIKDEGLGRSDKPDWVTVNATITFMKADTFCYT
ACPLMIGDRQCSKKVTRSGNRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQESG
EEILGCSAKELYMLKFEEQDDARFDSIVRQRVFNKYLFRLKIKEEMYGDEQRVKITVMKA
DKVNYATESKFMLESILKPLR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcacttaacgcccaacgctattcccgctattgtcggcggcgacgtgaactta
aagccgctcgtccagatcctggatatcaagcacatcggaagctcgcaggagaggtacaga
ctcttgatctcggatgcagtttccactcagcacgcgatgcttgcaactcagctcaatgac
cgagttaaggacggtagcataaggaatggatcggtcatccagcttatcgagtacctctgc
agctttgttcagaatcgccagctagttgtaattttgagtatggaaactattataccggaa
tgtgatataattgggaacccaaaacattttctcgaaccggattcaacagctcagaagatt
cagccgaatatcaatttacagcagccagctagggtttccaataatcgttaccaaccccct
cctgtagccaatgtgcaggatttccggcctgctgttcaacctccttaccaaccaccttct
aattacaaaagtcatggcactattcttaagaatgaagcacctgctcggatcattcctatt
gctgcattgaatccttaccaaggcaggtgggctatcaaggcaagagtgacagcaaaaggg
gaccttcgtcggtataataatgcccggggagatggaaaagtgttctcctttgaccttctc
gactctgaaggaggggaaatacgtgtcacctgtttcaatgctgttgttgaccgcttttat
gatgttatagaggttggtaaagtctatatgatttcaaagggtagcttaaaacctgctcag
aagaactttaaccatcttaaaaatgaatgggagatatttctagaggcaacttcaactgtc
gatctttgccctgatgaagatggttctataccaacacagcagttttcttttaggcctatt
agtgacattgaaagtgctgatagtaatactattcttgatgttattggtattgtcatatcg
gtgaatccttcagttcctatcatgagaaagaatggaatggaaactcagagaagaattttg
aatttaaaggactggtcaggcaggagcgttgagataaccctatggggggatttctgtaac
agagaaggtcagaagcttcaggatatgtttgattctggaatttgtccagttttagcggtg
aaagctgggaaggttaacgattttagtgggaaatcaataggtacaatatcttccactcaa
ctcttcataaatccagatttccctgaggctcatagcttgagagactggtttgatcgaggg
ggcaaggatgctgtatcgcagtccatttctaaagacatggtgcctggaatgcctaagaat
gagattcggaaaactatatctcaaattaaagatgaaggtctaggaagatcagataaacca
gattgggtcactgtcaatgctacaataacatttatgaaagccgatactttctgctacaca
gcatgcccgttgatgatcggagataggcagtgtagtaaaaaggtgacaaggtcaggaaac
agatggcagtgtgacagatgtaatcaagaatttgaagaatgcgactacaggtaccttctt
caagcccaaattcaagatcatacaggattgacatgggtgacagcatttcaggagtccggg
gaagagattttgggctgctcggcaaaggagttgtacatgttgaagtttgaagaacaggat
gatgcaagattcgattccatagttaggcagagggtttttaacaaatatctttttaggctc
aagattaaagaggagatgtacggtgatgagcaaagggtgaaaatcactgtaatgaaggct
gataaggtgaactacgctacagagagcaaattcatgcttgagtcaatattaaagcccttg
aggtaa
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