KEGG   Cannabis sativa (hemp): 115708042
Entry
115708042         CDS       T08987                                 
Name
(RefSeq) uncharacterized protein LOC115708042
  KO
K12857  Prp8 binding protein
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115708042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csav03041]
    115708042
Spliceosome [BR:csav03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    115708042
 Complex C
   U5 SnRNP specific factors
    115708042
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 EIF3I WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_RIG_1st Beta-prop_Nup120_160 Nbas_N
Other DBs
NCBI-GeneID: 115708042
NCBI-ProteinID: XP_030492068
LinkDB
Position
1:complement(48185280..48187513)
AA seq 346 aa
MMQVHPTESESALSVVGPRPMEWAAVPYNASQAPGQNGKQRTSSLESPIMLLTGHQSAIY
TMKFNPAGTVIASGSHDREIFLWHVNGECKNFMVLKGHKNAVLDLQWTTDGSQIISASPD
KTLRAWDVETGRQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTF
PDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMSLSPDGSYL
LTNGMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCNWSADGSKVTSGSSDRMVY
IWDTTSRRILYKLPGHIGSVNECVFHPTEPIIGSCSSDKQIYLGEI
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgatgcaggttcatcctacagaaagtgaaagtgctttatctgtagttggtccaaggcca
atggaatgggctgctgttccgtataatgcttctcaagcacctggccaaaatggaaagcaa
agaacttctagtttggaatcaccaatcatgttactgactggtcatcagagtgctatatac
acaatgaagtttaacccagctggaacagtgattgcatctggttctcacgacagagaaatt
ttcttatggcatgtcaatggtgaatgtaagaactttatggtcttaaaaggacacaagaat
gcagttttggatcttcagtggactactgatgggtcccagatcatatctgctagtccagac
aaaactctcagggcatgggatgttgaaacagggagacaaataaaaaagatggcagaacat
tcgtcgtttgtgaattcttgttgcccaacccgcaggggacctcctctcatagtgagtgga
tctgatgatggaactgccaaactatgggatatgcgtcaaaggggtgcaatccaaacattt
cctgataagtatcaaattactgctgtgagcttctcagatgcatcagataagatcttcaca
ggtggtattgacaatgatgttaaggtctgggacttgcgtaagggcgaagtaatgatgact
cttcaagggcatcaagatatgataacaggtatgtcattaagccctgatggttcctatctt
cttactaacggaatggactgcaagctctgcatttgggacatgcgaccctatgcaccccag
aaccgttgtgtgaagataatggaaggccaccagcacaactttgaaaagaacttgttgaaa
tgtaactggtctgcggatggaagcaaagtcacttctggaagttctgacaggatggtttac
atatgggatactacttcccgacgcatcttgtataaactcccaggacacattggatcggtg
aacgagtgtgtcttccacccaactgaaccaatcattggatcttgcagtagcgataagcag
atttatctcggggagatataa

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