Cannabis sativa (hemp): 115708707
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Entry
115708707 CDS
T08987
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115708707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115708707
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115708707
mRNA degradation factors
5'-3' decay
Decapping complex
115708707
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GFIT
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NCBI-GeneID:
115708707
NCBI-ProteinID:
XP_030492560
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Position
3
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AA seq
827 aa
AA seq
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MEAFERGSSIQETPNHEDLKQLGNDSTGEVFDASQYAFFGNDVLEEVELGGLDDEEVEMP
ATGFEEEEFLYGKEEAPISRSLSDIDSLASAFSKVVSGSRNMGPVGDVVSRESSSVTEWA
QEEFPNWNDHQMIESDSMSEGKRWSSQPFSSAARLLESNSLYRTSSYPEQQQQQQQYQHQ
QQHQPHFSSEPIPVPKSSFTSYPPPGGRSQQASPNQHSGHPNMPYLAGGPQGGLSSPNLS
PFSNSQLQLAGLPHGSHFGGSVPQLTPGLSANNNRMPNQWANQSGMYPGDHPGMLNSMLQ
QQLSHQNGIMPPQIMAQQQQQQQQQRMHHSVQPSFNHMSGMQSQLFNPHLPPSPPLMGKF
DAMLGPGDQRPKMVQKGRPFRFPQMGSDMNNHRNDVGWPQYRSKYMTSDEIEGILRMQLA
ATHSNDPYVDDYYHQASLAKKSSGAKLRHHFCPNHLRDLPPRARPNNEPHAFLQVDALGR
IPFSSIRRPRPLLEVDSPTLSGSGGTEQKDTEKPLEQEPMLAARVAIEDGLCLLLDVDDI
DRFLQFNLLPDSGTQLRRRRQAVLEGLAASLQLVDPLGKNSHTVGPVPKDDLVFLRLVSL
HKGRKLLARYLQLLFPGGDLMRIVCMAIFRHLRFLFGGLPSDPGAAETTDNLAKVVATCI
CEMDLGSLSACLAAVVCSSEQPPLRPLGSSSGDGASLILKSVLERATELLTDPHVASNYN
MTNRSLWQASFDEFFGLLTKYCVNKFDSIMQSLLVQGPTNMAAIGADAARSISRELPVEL
LRASLPHTNDQQRQVLLDFTRRSMAVSGSNIHNGGNDGRMNSESVPS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgttcgagcgtgggagtagtattcaagaaactcccaatcatgaagatctcaag
caattgggaaatgattccacaggtgaggtttttgatgcttcacaatatgcattctttgga
aatgatgtccttgaagaagttgagttaggaggattagatgatgaagaagtggaaatgcct
gctactgggtttgaggaagaggagtttctttatggtaaagaagaggctcctatctcaagg
tctctatctgatattgatagcctagcaagtgcattttcaaaggtagtaagtggatcgaga
aacatggggccagttggtgatgttgtatccagagaaagctcatctgttacagaatgggca
caagaggagtttccgaattggaatgaccatcagatgatagaaagtgatagcatgtctgaa
ggcaaaaggtggtcttcacagccattttcttcagctgctcgcctcctagaatcaaactct
ttgtacagaacttcatcgtatcctgagcagcaacagcaacagcagcaataccaacaccaa
caacaacatcaaccacacttttccagtgaacctattccagtgcctaaatcttccttcact
tcttatcctccaccaggtggcagatctcaacaagcatcacctaatcaacattcaggtcac
ccgaatatgccgtatcttgctggaggacctcaggggggattatcttcaccaaacctttcg
ccattttctaactcacagcttcaactggccgggttacctcatggatctcattttggtgga
agtgtgccacaacttactcctggtctgtctgctaataataaccggatgccgaaccaatgg
gctaatcaatctggcatgtatccaggagatcaccctggaatgttaaatagtatgttacag
caacagttgtctcatcaaaatggtataatgcctccacagataatggctcagcagcagcag
cagcagcagcaacagagaatgcaccattcagttcagccatcatttaaccatatgtcagga
atgcagtctcaattatttaatcctcatcttcccccttccccacctttaatgggcaaattt
gatgcaatgctcggtcctggtgatcaaagaccgaaaatggttcagaaaggcagacccttt
cgatttcctcagatgggttctgatatgaataaccataggaatgatgttgggtggccacag
tacagatccaagtacatgacatctgatgaaattgagggtattctcagaatgcaacttgct
gcaacacatagtaatgacccatatgtagatgattattaccatcaggccagtcttgctaaa
aaatcttctggcgctaagctgagacatcatttttgcccaaaccacttgagggatcttcca
ccacgagcacgacctaataatgaaccacatgcttttcttcaggttgatgctcttgggagg
attcccttctcttctattcgtaggcctcgtcctcttcttgaagtggacagtccaacttta
tcaggctctgggggtactgaacagaaggatactgagaagcccttagagcaggaaccaatg
cttgctgctagagttgcgattgaggatgggctctgtcttcttcttgatgtagatgacatt
gaccgcttcttgcaattcaatctgctccctgacagtggaacgcaattgagacgtaggcga
caggctgtgttggaagggcttgctgcatcacttcagttggttgatccacttgggaaaaat
agtcatacagttgggcctgttccaaaggatgatcttgtgttcttaagattagtctctcta
cacaagggtcgtaaacttttggcacggtaccttcagcttctattccctggtggtgatctc
atgcgaatagtttgtatggccatattccgtcacttacggttcttgtttggtggactaccc
tctgatcctggagcagcagaaactacagataaccttgcaaaggttgttgcaacatgcatt
tgtgaaatggaccttggttctcttagtgcttgtcttgcagcagtggtttgttcatccgaa
cagcctccacttcgtcctcttggcagttcttctggagacggggcttctctaatcctgaaa
tcagttcttgagagagcaactgaactattgacagatccccatgttgctagcaactataat
atgacaaaccgatctctttggcaggcttcatttgatgaattttttggccttttaactaag
tattgcgtaaataagttcgatagtatcatgcagtctcttcttgttcagggcccaaccaat
atggctgctataggagcagatgcagcaagatctattagtcgtgaattgccagtagaactt
ttgcgcgcaagtcttccacacaccaatgatcaacagaggcaagtattgttggatttcact
cgacgatccatggctgtgtctggatctaacattcacaatggaggaaatgatggacggatg
aattcagaatcagtaccgagttaa
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