Cannabis sativa (hemp): 115709001
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Entry
115709001 CDS
T08987
Name
(RefSeq) LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1-like
KO
K12236
transcriptional repressor NF-X1
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csav03000
]
115709001
04121 Ubiquitin system [BR:
csav04121
]
115709001
Transcription factors [BR:
csav03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
115709001
Ubiquitin system [BR:
csav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
115709001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-NF-X1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
115709001
NCBI-ProteinID:
XP_030492882
LinkDB
All DBs
Position
3:93472583..93476956
Genome browser
AA seq
1276 aa
AA seq
DB search
MSSNVRSERRDKPRSTAQASARREWVPRGAPMVTVVNQPSSNSTEDVNDSILSSHGRFKA
NSSSNLNSGENGNGGVPTHGGSSASHGHSRYRGNNSSHSNSAENGNDSVSASHSHGRYRG
YNSSHSNSAESGNDSVSASYSHNRYRGNNSSHSNSGEHGHGADPGGHSYQYRGNANLHLN
STENGNGGDSSHSSAVSYGQYKGNSNFHLNPAANGIGVDSTNSFAASHGRYKGNYSSKGQ
VSRPVNHRREQQERGSESNELESREKSTGKNGRFSKDSTLPQLVQEIQEKLMKGAVECMI
CYDMVRRSAPVWSCGSCYSIFHLNCIKKWARAPTSVDLSVDNHGFNWRCPGCQSVQLTSS
KEIRYVCFCGKRTDPPSDLYLTPHSCGEPCGKPLERDVGRGGSKEDHCPHVCVLQCHPGP
CPPCKAFAPPRICSCGKKIITTRCSDRKSGLTCGQRCEKLLSCGRHRCEQMCHVGPCDQC
EVEVNAACFCKKKVEAVLCADMTVKGAVKAEDGVFSGNSLCEKKLNCGNHFCIXICHPGT
CGECELLPSKTKTCHCGKTVLKEERNSCLDPIPTCSKICQKLLPCKKHSCEEVCHAGDCP
PCLVKVSQKCRCTSTSRIVECYKTTSDENFSCDRTCGRKKSCGRHRCNERCCPLSNSSSS
HTGEWDPHFCSMSCGKKLRCGQHACESLCHSGHCPPCLETIFTDLICACGRTSIPPPLPC
GTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRC
NKLCGKTRQCGMHACGRICHLPPCDSQMGSEPGLRSSCGQTCGAPRRDCRHTCTAPCHPS
SLCPDTRCDFPVTITCLCGRISASVPCDAGGNSGNYNADTVYEASVMQKLPAQLQPVEAT
SGNKIPLGQRKLICDDECAKLERINVLADAFDIASPTWMPFISGEFLCFELLGDLYRLDP
KWVISVEERCKYLVLGKNRGSSSGLKVHVFSPMLKEKRDAVRVIAERWKLAVNAAGWEPK
RFIVVHVTPKSKVPPRILGVKGTTTVSAPQPPAFDPLVDMDPRLVVSFQDLPRDADISAL
VLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGSVYNGAVTFHATTSGASSGSNS
GTNAWGGGAGMVSKSNPWKKAIVQEDTWGGDEWSTSGSADVQPSAWKKETPLAASINRWS
VLDSENATTSSSSSSSSLPKSFAGTKKALGGGLHSSLENVPTPAAAPLVGNVTETETSEV
AEDWEKAYDSSIEEEK
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgagttctaatgttcgaagcgagcggagggataagcctaggtcaacagctcaggcttct
gctaggcgagaatgggttcctagaggtgctcctatggtgactgtggtgaatcagccttct
tccaattcaacggaggatgttaatgattcaatccttagttcccatggtcggttcaaggca
aatagtagttctaatttgaactcgggagaaaatggaaatggtggtgttcctactcatggt
ggttcttcagcttcgcatggtcatagtcgatacagagggaataatagctcacattcgaac
tcagccgaaaatggaaatgacagtgtttcagcttcacatagtcatgggcgatacagaggg
tataatagctcacattcaaactcagctgaaagtggaaatgacagtgtttcagcttcgtat
agtcataatcgatacagagggaataatagttcacattcgaactcgggagaacatggtcac
ggtgctgatccgggggggcatagttatcagtacagggggaatgctaatttgcatttgaac
tcaacagaaaatggaaatggtggtgattcgagccatagctctgcagtgtcttatggtcag
tacaaggggaatagtaatttccatttgaacccggctgccaatgggattggtgttgattct
actaatagctttgcagcgtctcatggtcgttacaagggtaattatagttcgaagggtcaa
gtgagtcgaccagtcaatcataggagggagcagcaggaaagaggtagcgagtctaatgaa
ttagagtcgagagaaaagagtacaggcaagaatggaaggttctcaaaggactctacttta
ccacagcttgtgcaagagattcaagagaagcttatgaagggagcagttgaatgtatgatt
tgctatgacatggttagaagatctgcccctgtttggtcttgtggcagctgttattcgatt
tttcatttgaattgtatcaagaaatgggcaagagcgcctacctccgttgatttatctgtg
gacaatcatggatttaattggcggtgtcccggatgtcagtctgtgcagctcacatcctca
aaagagattcgatatgtttgtttttgtggtaagaggacagacccaccttcagacttatat
ttgacaccccattcatgtggggaaccttgcgggaagccactcgagagagatgttggtcgt
ggaggaagtaaggaagatcattgccctcatgtttgtgtgttgcagtgccaccctggtcca
tgtcctccttgtaaagcatttgccccgcctcgtatatgctcgtgtggcaagaaaatcatt
accacaagatgctctgatcgcaagtccggtcttacttgtggtcagcgctgtgaaaagctt
cttagttgtggtcgacacaggtgtgagcagatgtgtcatgtcggtccttgtgatcaatgt
gaagtagaggttaatgctgcctgtttctgtaagaaaaaagtggaggctgttctttgtgca
gacatgactgtgaagggagcggtgaaagcagaagatggagtcttttcgggtaattctctt
tgcgaaaagaagctaaactgtggtaaccatttctgtatannaatttgtcatccaggcact
tgtggagagtgtgagttattaccaagcaagaccaagacatgccattgtgggaaaacagtt
ttgaaggaggaacgaaatagttgcttagacccgattccaacctgttcgaaaatatgccag
aagctccttccatgtaagaagcattcctgtgaagaggtgtgccatgctggtgattgtccg
ccttgtttggttaaagtctcacaaaaatgccgttgcacctcaacttctcgaattgtggaa
tgttataaaacaacttcagacgaaaatttcagttgtgacagaacctgtgggcgtaaaaaa
agctgtggaagacaccgttgcaatgagcgatgctgtcctctttctaattcgagcagcagt
cacacaggagaatgggatccacacttttgttcaatgtcatgtggtaagaagctaagatgt
ggacaacatgcttgtgaatctctctgtcatagtggtcactgtcctccatgtctcgaaacc
atatttaccgatttaatttgcgcttgtggaagaacttcaatacctcctccattaccttgc
ggaacacctcccccgtcttgtcaactcccatgttcagtacctcagccttgtggccattcc
gcttctcacagctgccacttcggagactgccctccttgctcggtgcctgtagcgaaggag
tgtatcggtgggcatgtggttttgaggaacattccttgtggttcaaaggacattagatgt
aacaagctctgtggtaagaccaggcaatgcggtatgcacgcctgcggaagaatctgtcat
ttgcctccttgtgattctcagatggggtctgaaccgggtttaagatcttcttgtgggcaa
acatgtggtgcgccgaggagagattgtagacatacatgtaccgcgccttgtcacccgtcc
tctctttgtcccgatacacgttgtgattttcccgtgacgattacttgcttatgtggccgt
atatcagcaagtgttccttgtgatgccggcggtaatagtggtaactataacgccgatact
gtttacgaagcttcggttatgcagaaattaccggctcaacttcaacctgtagaagctacc
agtggtaacaagataccacttggacagaggaagcttatatgtgatgatgaatgtgctaag
ttggagcgcataaacgttcttgcagatgctttcgatatagcgtctccaacttggatgccc
ttcatttcgggcgaattcctctgtttcgagttactgggagacctctataggctagatccc
aaatgggtgatttctgtagaggaaagatgcaaatatttagttcttggcaagaatagagga
agttcgagcggtcttaaggttcatgtgttctctccaatgctgaaggagaagagagacgct
gttcgggtaatcgctgaaagatggaagcttgctgtaaacgcagccggttgggaaccgaaa
cgcttcatcgtagttcatgtaacgcctaaatcgaaagttccacctcgtattctcggcgtt
aagggtaccacaaccgtcagtgcacctcagccacctgcattcgatcccttagtagacatg
gatcccagacttgttgtttcgttccaagatttgcctagagatgctgatatcagtgcattg
gttttgagattcggcggagaatgtgagcttgtgtggttaaatgacaagaatgcattggct
gttttccatgatcctgctcgtgcagctactgctatgaggagattagatcacggatcggta
tacaacggagccgttacgtttcacgcgacgacttcaggtgcttcttccggttcaaattcg
ggaacaaatgcttggggcggaggagcagggatggtgtcgaaaagtaatccatggaagaaa
gcaattgttcaggaagatacatggggcggcgacgagtggtcaacgagtggctcggccgat
gttcaaccgtctgcgtggaagaaagaaactccactcgcagcgtcgataaaccgatggagc
gttctagatagtgaaaatgcaaccacttcatcgtcgtcatcgtcgtcgtcattaccgaaa
tcttttgccggaacaaaaaaagcgttaggtggtggtttgcattcgagtttagaaaacgtg
ccaactccggcagcagcgccgcttgtcgggaacgttaccgaaaccgagacatcggaagtg
gctgaggattgggagaaggcttatgatagtagcatagaagaagaaaaatag
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