Cannabis sativa (hemp): 115709173
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Entry
115709173 CDS
T08987
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X2
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115709173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115709173
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115709173
Spliceosome [BR:
csav03041
]
Complex C
Other components
Step II factors
115709173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
PhoH
Helicase_RecD
AAA_23
SLFN-g3_helicase
ATPase
ABC_tran
AAA_16
AAA_30
Motif
Other DBs
NCBI-GeneID:
115709173
NCBI-ProteinID:
XP_030493076
LinkDB
All DBs
Position
3:complement(41231642..41237841)
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AA seq
713 aa
AA seq
DB search
MAQGSLNKATLSGSSTNDNRKVDNFARRQKLSQHRRSLPIATVERRLIDEVRKNDILIIV
GETGSGKTTQIPQFLFNAGFCKEGKSIGITQPRRVAAVTVAKRVAEECGVELGQRVGYSI
RFEDVTSSSTRIKYMTDGLLLREALLDPYLSRYSVVIVDEAHERTVQSDVLLGLLKNVQI
ARSKSNGHLDTETNKPKNGMVLEKENDVQSSIFLKHDQGKKFPPLKLIVMSASLDARVFS
DYFGGAKAVHVQGRQFPVEIFYTFHPEPDYLDATIITVFQIHLEEALGDILVFLTGQEEI
ESVERLIKERVLQLPENNQRLVIVPIFSSLPSEQQMRVFASTPAGYRKVILATNIAETSV
TIPGIKYVIDPGLVKARSYDPKQGLESLTVVPISKAQALQRSGRAGREGAGKCFRLYPES
EFDKLENSTKPEIKRCNLANVILQLKALGVDDIIGFDFIEKPSRSAIVKSLEQLFLLGAL
TDECKLSDPVGRQMSKLPLDPVYSKALIVASEFKCLQEMLITVAMLSVESMFYAPRDKLD
EARAAMKFFSSPEGDHLTLINVFRAANEFMEKKNLTCGKEKADKILRKWCKENFINSRSL
RHARDIHNQIREHVQQMGLRIVSCGDDTLNFRRCLAASFFLNAALKQPEGTYRTLASGQM
VQIHPSSVLFQKKPECLIYNELIQTNHKYIHKITRIDYLWLTELAPQFYSMQS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaggaagtcttaacaaggccaccctcagtggaagctctactaatgacaatcga
aaagttgataattttgctaggagacaaaaattgtcgcagcatagaaggtctcttcctatt
gctaccgtcgagcgaagactcatagatgaagttcggaagaatgatattttgatcattgtt
ggtgaaactggaagtggaaaaacaacccaaataccccagtttctgttcaatgctggattt
tgtaaagaaggcaaatctattggaataactcaacctcggcgtgttgctgctgtaaccgtt
gcaaaaagggttgctgaggaatgtggtgtggagttgggtcaaagggttggatactcaatt
agatttgaggatgtgacttctagctcaacaaggatcaagtacatgactgatgggctattg
ctgagggaagcattgttggatccatatctcagtagatattcagttgtaattgttgatgaa
gctcatgagagaactgtccagagtgatgtgttactaggccttctaaaaaatgttcaaatt
gcacggtcaaaatcaaatggccatctagatactgaaacaaataagccaaagaatggcatg
gtgttagagaaagaaaatgacgttcaatcttcaatttttctcaagcatgaccaaggaaag
aaatttcctccactgaagttgattgtcatgtctgccagtttggatgcacgtgtcttctct
gattactttggtggtgcgaaagctgttcatgtccaagggcgacagtttcctgtggagata
ttttatacatttcatccagaaccagattatttagatgcaaccataattactgtattccag
attcatctggaggaggcccttggtgatatacttgtatttttgactggacaagaagagatt
gaatccgttgagagacttatcaaagagcgagttttacagttacctgaaaacaatcaaaga
ctagtaattgtgccaatattttcatctcttccatcagaacagcagatgcgagttttcgca
tcaactccagccggatatcgcaaggtgatacttgctacgaatattgctgagacgtccgta
actattcctggaattaagtatgttatagacccaggtttggtaaaagcacgatcgtatgat
ccaaagcaaggactggaatctttgactgttgtaccgatttcaaaggcgcaggctcttcaa
aggagtggacgtgctgggcgagaaggggctggaaagtgtttccgtctttacccagagagt
gaatttgacaaacttgagaactcaacgaagccagagatcaagagatgcaaccttgctaat
gtaattttgcaactcaaggctctgggtgtggatgatatcattgggtttgattttattgaa
aaaccttcaaggtcagctattgtcaaatcattggagcaattgtttttgctaggtgcttta
acagatgaatgtaaactctctgatccagttggtcgtcaaatgtcgaagcttcctttagat
cctgtttattcaaaggcccttatcgtagctagtgagttcaagtgcttgcaagaaatgttg
ataactgttgcaatgctttcggtcgaatctatgttttatgctcctcgggacaagttagat
gaggcaagagctgcaatgaaattcttttcaagtcccgagggagatcacctcactttgatt
aatgtatttcgagcagctaacgagtttatggagaagaagaacttgacctgtggtaaagag
aaagctgacaagatcctaagaaaatggtgcaaggaaaacttcattaatagtcgctcccta
agacatgcccgtgatattcacaaccaaatccgagaacatgttcaacaaatgggtcttcgt
attgtctcttgtggagacgacacactaaacttccgcagatgtcttgctgcttcattcttc
ctcaatgcagctctaaagcaacccgagggaacctataggactttggcaagtggtcagatg
gtgcagatccacccttcttctgtgttattccagaaaaagccagaatgcttaatctacaat
gaactaatccaaactaaccataagtatatccacaaaataactagaattgattacttgtgg
ttaactgaactggctccccaattttattctatgcagagttga
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