Cannabis sativa (hemp): 115709293
Help
Entry
115709293 CDS
T08987
Name
(RefSeq) ABC transporter A family member 1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
csav
Cannabis sativa (hemp)
Pathway
csav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115709293
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
csav02000
]
115709293
Transporters [BR:
csav02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115709293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
SMC_N
RsgA_GTPase
SH3_Rv0428c
AAA_29
Motif
Other DBs
NCBI-GeneID:
115709293
NCBI-ProteinID:
XP_030493226
LinkDB
All DBs
Position
3:complement(6068932..6089553)
Genome browser
AA seq
1874 aa
AA seq
DB search
MGVATRQLKAMLRKNWLLKIRHPYITAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIQK
DMFVEVGKGASPNFEQLLELLLSKGEYLAFAPDTEKTKTMINIMSIKFPLLQLVSRVYKD
EEELETYIRSDNYAICSQIRNCSNPKIKGAVVFHDQGPQLFDYSIRLNHTWAFKGFPDIR
SIMDTNGPYVNDLELGVNPVPILQYSFSGFLTLQQILDSFIIFAAQQSDIGNVEPSYIHP
FGESSSLKGPFMQFSPSNIRIAPFPTREYTDDEFQSIVKKVMGVLYLLGFLYPISRLISY
TVFEKEQKIKEGLYMMGLKDEIFYLSWFIVYSLQFAVSSAIIVVCTMGSLFKYSDKTVVF
TYFFLFGLSAITLSFLISTFFSRAKTAVAVGTLSFLGGFFPYYSVDDQAVSMILKVVSSL
LSPTAFALGSVNIADYERAHVGLRWSNMWRPSSGVNFSICLLMMLVDTLLYGAIGLYLDK
VLPRENGIRYPWNFIFKKTFWKKTNMSIDYASILDASINGKASGNFHGKDNLTPSVEAIS
LDMKQQELDGRCIQIRNLRKVYDTKKGKCCAVNSLQLNLYENQILALLGHNGAGKSTTIS
MLVGLIPPTSGDALVFGKNIISEMDEIRKVLGVCPQNDILFPELTVREHLEIFAKLKGVE
EDSTERVVTDMVDQVGLADKINTVVKALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDP
YSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG
YTLTLVKSAPTASVAADIVYRHIPSATCVSEVGTEISFKLPIASSMSFENMFREIEGCMK
KPDFDVKASDGEERDYAMIESYGISVTTLEEVFLRVAGCDYNEAECLEQKNSICLPSPVT
SEVPHDTAPKKILQSDKLLGNYKDILRFMCTVVGKVCGLIFATILSFINFLSMQCCCCCI
ISRSTFWQHCKALFIKRAISARRDRKTIVFQLLIPVVFLFVGLLFLKLKPHPDQQSVNFT
TSNFNTLLSGSGGGGPIPFDLSTPIAKEVSQYIEGGWIQSFKPSAYRFPDSEKALTDAIE
AAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDMNEDGTLGYTVLHNSSCQHAAPTF
INLMNAAILRLATQDKNMTIRTRNHPLPMTYSQHLQRHDLDAFSAAVIVSIAFSFIPASF
AVSIVKEREVKAKHQQLISGVSILSYWASTYIWDFISFLFPFSFAIGLFSIFGLDQFIGR
DCFLPTVIMFLGYGLAVASSTYCLSFFFSDHTMAQNVVLLINFFSGLILMVISFIMGLIK
STVSANSFLKNFFRLSPGFCFADGLASLALLRQGMKDKSSDAAFDWNVTGASICYLGVES
ICYFLLTLGLELLPSYKEWWSIKSFRRDGSPHLEPLLGSSAEKVALDFDEDSDVAMERNR
VLSGSIENAIIYLRNLRKVYPGGKVAVQSLTFSVQEGECFGFLGTNGAGKTTTLSMLSGE
ESPTDGSAYIFGKSIRTNPKAARQQIGFCPQFDALLEFLTVQEHLELYAKIKGVSDYRID
DVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF
MWEVISRISTRRGKTAVILTTHSMDEAQALCTRMGIMVGGRLRCIGSPQHLKTRFGNHLE
LEIKPIEVSREDMENLCEIIHERLVNIPAHSRSLLGDLEACIGRIDTITSENTSRAEISL
SREVISMIGRWLGNEERIQMLISSTPVPDGFFGEQLCEQLVRDGGIPLPIFSEWWLSKEK
FSAIESFVVSSFLGATFQGCNGLSVKYQLPYGEGMSLADVFGHLERNRNQLGIAEYSLSQ
SNLETIFNHFAANP
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcgctaccagacagctcaaggctatgcttcgcaagaactggcttctcaaaatt
cgtcacccttatattaccgctgctgagattttgcttcctacagtggttatgttgttgtta
atagcagtaaggactcgagttgatacacgaattcacccagctcaaccgtatatacagaaa
gatatgtttgtggaagtaggcaaaggagcgtctcctaattttgaacaacttctagaacta
ctattgagtaaaggagagtatttggcttttgcacccgatacagagaagacaaagacaatg
attaacataatgtcgataaaatttccccttttacagctagttagcagagtctacaaagat
gaagaggagctggaaacctatattcgttcggataactacgccatctgcagtcaaataagg
aattgttcaaaccctaaaatcaaaggagcggtggtattccatgatcaaggtcctcagttg
tttgattatagtatacgtctcaatcacacgtgggctttcaagggatttcctgatattaga
tccattatggacacaaatggtccttatgttaatgacttggaactgggcgttaatcctgtg
ccgatattgcagtatagcttcagtggtttcttgactctccagcagatactggattccttt
ataatttttgctgcacaacaatctgacattggaaatgttgaaccttcttatatccacccc
tttggggaatcttcatcccttaaagggccatttatgcaatttagcccttctaacataaga
atagctccctttcccacccgggaatacactgatgatgagttccagtcaatcgtcaagaag
gtcatgggtgtattgtatcttctgggatttctatacccaatctctcgtctaatcagctat
acggtatttgagaaggagcagaagataaaagaaggtctctacatgatgggactaaaagat
gaaatattctacctttcttggtttattgtgtattctttgcagtttgcagtttcgtctgca
attattgtggtttgcacaatgggcagccttttcaaatatagcgacaaaacagttgttttc
acatacttctttctgtttggactaagtgcaataacactatcatttttgatctctacattt
ttttcacgagccaaaaccgccgttgccgttggaaccctttcttttttaggtggctttttt
ccatattattctgttgatgaccaagctgtttcaatgatattaaaggttgtatcttctctg
ctttcacctacggcctttgctcttggttcggttaacattgctgattatgagcgtgctcat
gtgggacttcgttggagcaacatgtggcgaccatcttctggagtcaacttttcaatctgc
cttttgatgatgctggtcgacacattgctgtacggtgcaatcggtctttacttggataag
gtccttcccagagagaatggaattcgttacccatggaacttcattttcaagaagactttt
tggaagaagacaaatatgagcattgattacgcttccattcttgacgctagtataaatgga
aaagcttcagggaatttccatggtaaagataatttaactccatctgtggaagcaattagc
ttggacatgaaacaacaagagcttgatggcagatgcatccaaataaggaatctgcgcaag
gtatatgacactaaaaaagggaagtgttgtgctgttaactcattacaactcaacttgtat
gaaaatcagattcttgctcttctaggacacaatggggctggtaaaagtacaacaatttcg
atgcttgttggtcttattccacctacttcaggggatgctttggtgtttgggaagaatata
atatcagaaatggacgagataagaaaggtattgggtgtgtgtcctcaaaatgatatcctt
ttcccagaattaactgtgagggaacatttagaaatatttgccaaattgaaaggtgttgag
gaggattctacagaaagagttgttactgatatggttgatcaagtggggctggctgacaaa
attaacactgttgtgaaggctctttctggaggtatgaagaggaaattatctcttggtatt
gcgctgatagggaatagtaaggttataattcttgatgaacctaccagtgggatggatccg
tactcgatgcgtttgacatggcaattaataaagaaaataaagaagggcaggataattttg
ctaacaactcattcaatggatgaggctgaggaacttggtgatcggattgctatcatggct
aacggttccttaaaatgctgtggaagctcccttttcctgaagcatcaatacggagttggt
tacactctaactttagtaaagtctgcacctactgcctctgtagctgctgacattgtttat
cgccatattccatcggctacatgtgtgagcgaggttggaactgagatttctttcaagctt
cctatagcatcttcaatgtcgtttgagaatatgtttagggaaatagaagggtgcatgaaa
aaaccagattttgacgtaaaagcaagtgacggtgaagagagagattatgctatgattgaa
agttatggtatatcggtcacaactctcgaggaagtattcctcagagttgcggggtgtgac
tacaatgaagctgaatgtttagagcagaaaaatagtatctgtttaccttctcctgtgact
tctgaggttcctcatgatacagctcccaaaaagattttgcaatctgacaaacttttgggt
aactataaagatattctgaggttcatgtgtactgtggtggggaaagtttgcgggttgatt
ttcgctacaattttaagtttcattaacttcttaagtatgcaatgctgttgttgctgtatc
atttcaaggtcaacattttggcagcactgtaaagcgctattcataaaaagagcaatatct
gctcggagggatcggaaaacaattgttttccagcttctgattcctgttgtgttcttgttt
gttggtcttctttttctcaagctcaaaccacatcctgatcagcagtctgtgaactttacg
acctcaaatttcaatactttgttaagtggtagtggcggcggcggtccaattccttttgac
ttatcgacacctattgccaaggaggtatcacagtatattgaagggggttggatccaaagc
tttaaacctagtgcatatcgattccctgattcagaaaaggcactaactgatgcaattgag
gctgcaggacccactctgggaccagttttactttcaatgagtgaatatctaatgtctagc
tttaatgaatcttaccagtcaagatacggggcaattgttatggatgatatgaatgaagat
ggaactttaggatacactgtactgcataacagctcttgtcagcatgctgctccaactttt
attaatttaatgaatgctgcaattcttaggcttgctacccaggataaaaatatgacaatt
agaacacgcaaccaccccctgccaatgacttatagccagcatttgcaacgtcatgatctg
gatgccttctctgctgcagttattgttagcattgccttctcattcattcctgcttcattt
gctgtttccattgtgaaggagcgagaagtaaaagctaagcaccaacaactgataagcggg
gtttctatactttcatattgggcttccacttacatatgggacttcatcagcttcttattt
cctttctcatttgcaattggtctttttagtatatttggtctggaccagtttatcggaagg
gattgtttcttgccaacagtcatcatgtttttgggatatggtttagcagttgcatcgtca
acatattgcctttctttcttcttttcagaccatactatggctcagaatgtagttctcttg
atcaactttttctctggactcattcttatggtcatatctttcatcatggggcttattaag
tcaactgttagtgcaaattcttttctcaagaatttcttccgactttctccagggttttgc
tttgctgatgggcttgcatcactagctcttctgcgtcaagggatgaaagataaatctagt
gatgcggcttttgattggaatgtaactggtgcttctatatgctatcttggtgttgagagc
atttgttacttcctcttgacacttgggcttgaactcttgccttcctacaaggagtggtgg
agtataaaaagtttccgacgggatggttctcctcatttagaaccacttttgggatcctct
gcagaaaaggttgctcttgactttgatgaagactcagatgtggcaatggaaagaaacaga
gtactttcaggttccattgagaatgctatcatttacttgcgtaatcttcgaaaggtgtat
cctggaggaaaagtggcagtgcaatctctgactttctcagttcaagaaggggaatgtttt
ggctttttaggcacaaatggagcagggaagacaaccactctgtcaatgctatctggagag
gaatctccaacagatggatcagcttacatatttgggaaaagtattcgcaccaatccaaag
gcagctcgtcagcagattgggttttgcccacagtttgatgctttgctagaatttttaact
gtccaagagcatcttgagctttatgcaaaaataaaaggagtgtcagattatcgtatagat
gatgttgtaatggaaaagttagtggagtttgacttgttgaagcatgctaacaaaccatca
ttttctctaagtggaggaaacaagcgtaaattgtctgttgcgatcgcaatgattggagat
cctcctatagtcatacttgatgaaccatctacaggtatggatccaattgccaaacgtttc
atgtgggaggtgatatcccgtatctcaacaagacgaggaaagaccgctgtaattcttact
acccacagcatggatgaagctcaagctctgtgtaccaggatggggataatggttggaggc
cgactgagatgcattggaagtcctcagcatctgaaaacaagattcgggaatcatcttgag
ctagagattaaacctattgaagttagccgcgaggacatggaaaatctttgcgaaatcatt
catgaaagactcgttaatattcctgcacactctagaagtttacttggtgatcttgaggct
tgcattgggagaattgacaccattacatcagaaaatacgtctcgtgcagagattagcttg
tcacgggaagttataagtatgattggaaggtggcttggcaatgaagaaagaattcagatg
ctcatctcgtccacacctgtacctgatgggtttttcggcgaacagttgtgtgagcagtta
gttcgggatggtggtatccctttgccgatattttccgaatggtggttatccaaagaaaag
ttttcagcaattgaatcatttgttgtctcatcatttctgggtgcaactttccaaggatgc
aatgggctgagtgttaaatatcagttgccttatggagaagggatgtcactagccgatgtc
tttggacacctcgaacgaaacagaaatcaacttggcatcgcagaatacagtctcagccag
tccaatctagaaaccattttcaatcattttgcggcaaacccctaa
DBGET
integrated database retrieval system
