Cannabis sativa (hemp): 115709350
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Entry
115709350 CDS
T08987
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115709350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115709350
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115709350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
115709350
NCBI-ProteinID:
XP_030493296
LinkDB
All DBs
Position
3:75889062..75897985
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AA seq
942 aa
AA seq
DB search
MTQNFEDQNKLPELKLDAKQAQGFLSFYKRLPQDARAIRFFDRRDYYTAHGENATFIAKT
FYHTTTALRQLGSGSESLSSVSVSRNMFETIVRDLLLERTNHAVELYEGSGSNWRLVKSG
TPGNISSFEDILFANNEMQDTPVVVALVPNFRENSCTIGLGYVDLTKRVLGLAEFLDDSH
FTNVESALVALGCKECLLPLESGKSSEIKTLYDSLTRCGVMLTERKKADFKMRDLVQDLG
RLVKGSIEPVRDLVSGFEFAPCALGALLSYADLLADESNYGNYSIRRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNMWLKQPLIDVNEINTRLDLVQAF
VEDPALRQDLRQHLKRISDIERLVNNLEKKRAGLQHIVKLYQSCIRLPFIKSALEQYDGQ
FSSLVKEKYLDPLEICSDEDHLNKFVALVEVSVDLDQLENGEYMISSSYDPALSALRDEQ
ESLDREISDLHKVTANDLDLPVDKALKLDKSTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDKYQKVLEEYKNCQKELVSRVVQTAATFSEVFGSLAALLSEID
VLLSFADLASSCPSPYTRPEITTSDEGDIILQGSRHPCVEAQDWVNFIPNDCELMRGKSW
FQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDKACISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHESADREPNIKPIVGVANFHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVA
EFANFPETVVALAREKASELEDFSPTSVVSNDSTLEVGSKRKRECDSDDVSQGAARAHQF
LKEFYDLPMEKMNVRQVLEKISKMKDDLKKDAVNSKWLQQLI
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgactcagaattttgaggatcagaacaagcttcctgagctcaaactagatgctaagcaa
gctcaagggttcctctcattctacaagagactgcctcaagacgcaagagcaattcggttc
tttgatcgtcgggattactatactgctcatggcgaaaatgcaacttttattgcgaagacc
ttctaccacactaccacagcactgcgacaattgggtagtggttcagaaagcctctccagt
gtaagtgtaagtagaaatatgtttgaaacaattgtccgtgatcttcttttggagagaaca
aaccatgctgttgagctctacgagggtagtggctcaaattggagactggtgaaaagtgga
accccagggaatatcagtagctttgaagatattttatttgccaacaatgagatgcaagat
acccctgttgttgttgcactagtgcctaattttcgtgaaaatagctgcactattgggttg
ggttatgttgatcttactaaacgagtgcttgggcttgctgagtttcttgatgatagccat
tttacgaacgtcgaatcagctttggttgctcttggttgcaaggaatgtcttttgccttta
gaaagtggaaaatccagtgaaatcaagactttgtatgattcattgactagatgtggggtg
atgttaactgagagaaagaaggctgattttaagatgagggatttggtgcaggatcttggc
aggctcgtcaaaggttctattgagccagttcgagatttagtatctggatttgaatttgca
ccttgtgctttgggagcactgctgtcatatgcagatcttctggcagatgagagcaattat
ggaaattattctatccgaagatacaatcttgatagctacatgagattggattctgctgct
atgagagctcttaatgtcctggaaagtaaaacagacgcaaacaaaaatttcagtttattt
ggactaatgaatagaacgtgtactgctggaatgggaaaaagactgctgaatatgtggttg
aaacagcctttgatagatgtaaatgaaattaataccaggcttgatttagtacaggcattt
gttgaggatcctgcacttcgccaagatttaaggcaacatcttaagagaatctcagatatt
gagcgactggtgaacaatcttgagaagaaaagggctggtttacagcatatcgttaaactt
taccagtcgtgtataagacttccattcattaagagtgctctagaacagtatgatggtcaa
ttttcttctctggtgaaggagaagtacctggatcctcttgagatatgttctgatgaagat
cacctgaataagtttgttgctttggtggaagtttctgttgaccttgatcaactagaaaat
ggggaatacatgatatcatctagttatgaccctgcactatctgcattgagagatgaacaa
gaatcactagatcgagaaattagcgatttgcataaagttactgccaatgatcttgatctg
cctgtagataaagctttaaaattagataaaagcacacagtttggacatgtatttaggatt
acgaagaaggaagagccaaaaataagaaaaaagcttacgacccaatttattgtccttgaa
acccgaaaggatggagtcaagtttactaacacaaaacttaagaagctgggagacaagtac
cagaaggtgcttgaggagtacaagaattgtcagaaagaactagttagccgtgtagttcaa
acagcagccactttctctgaggtgttcgggtctttagctgctttgctttctgaaatagat
gtcttgctgagctttgcggatttagcgtcttcttgtccatctccctacactagaccagaa
atcactacatcggatgagggtgatatcatattgcaagggagtagacacccttgtgttgaa
gcccaggactgggtgaactttataccaaatgattgtgaactaatgaggggtaaaagttgg
ttccagatcattacaggacctaatatgggtgggaaatccacatttattcggcaggttggc
gtaaacgtattgatggctcaagttggctgttttgttccatgtgacaaagcttgcatttct
gttcgtgattgcatttttgctcgtgttggtgctggtgactgccaactacgtggggtgtct
acgtttatgcaagagatgctagagactgcgtctattttgaaaggtgctacagagaagtca
ttgataatcattgatgagttgggcaggggaacatcaacttatgatggctttggtttggct
tgggccatttgtgaacaccttgttgaagtgattaaggcacctactttgtttgcgacccac
tttcatgaactaactgcattggctcatgaaagtgctgatcgtgaacctaacatcaagcct
attgttggtgtagcaaactttcatgttagtgcacacattgactcgtcaactcgaaagttg
accatgctgtacaaggtagagccaggagcttgtgatcaaagttttggtattcatgttgcc
gaatttgcaaattttcctgagactgtagtggcacttgctagagaaaaggcttctgaattg
gaagacttctcacccacttcagttgtttcaaatgattctacacttgaggtgggatcaaag
cgcaagagagagtgtgattccgatgatgtctctcaaggtgctgctcgtgctcaccagttt
ctgaaggaattctatgatttgccaatggagaaaatgaatgtaaggcaggttttagagaaa
atcagcaagatgaaagatgacttgaaaaaggatgcggtgaactctaaatggctccaacag
ctaatctag
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