Cannabis sativa (hemp): 115709485
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Entry
115709485 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115709485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115709485
03009 Ribosome biogenesis [BR:
csav03009
]
115709485
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115709485
Spliceosome [BR:
csav03041
]
Complex A
U1 snRNP components
U1 related factors
115709485
Complex B
115709485
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
Helicases
115709485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115709485
NCBI-ProteinID:
XP_030493462
LinkDB
All DBs
Position
3:5515961..5520286
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AA seq
629 aa
AA seq
DB search
MNPYDHRLADPSSYRDRRSDLIGPTQAGTGPSYGRPGGPVSYGGSAGRGVSGPGPNAGNF
NGYPPFQPPGSRFDMGRGGGGRGRGFDSGGRGGDRFGGSRSFDGNGTGGKSYGGGRGERY
GYSGGRGGGRGFEGRGGGRGGRFNASSKGELDNVALPRQDFGDLVPFEKNFYIESPSVRA
MSEHEVMLYRSRREITVEGHDIPKPIRMFEEANIPDYCLEVIAKLGFAEPTAIQAQGWPM
ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLAYGEGPIVLVIAPTRELAVQIQEEV
VKFSLRANVRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL
DEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEVLARQFLRNPYKVVIGSTHL
KANQSINQIVEVMTDMEKYNRLIKLLKEVMDGSKILIFIETKKGCDQVTRQLRMDGWPAL
SIHGDKNQTERDWVLAEFKNGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHRI
GRTGRAGAKGTAFTFFTLANVKYARELIKILQEAGQTVSPALSALARSSGSGHGGSGGNF
RSRGRGGGFGNRSLISGSNTIPLGNRRQW
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgatcacagactcgcagatccgagctcctacagagaccggcgaagtgac
cttatcggaccgactcaggcgggaacgggaccaagctatggccgccccggaggtccagtg
tcgtacggaggttcggctggaagaggggtttctggaccaggacccaatgccggaaatttc
aatgggtatccgccgtttcagccacctggcagtcggtttgatatgggtcgaggtggcgga
ggacggggaaggggttttgactctggaggtcgaggtggtgatagatttggaggaagtagg
agttttgatggcaacgggactgggggtaagagctatggtggtggtcgtggtgaaagatat
gggtattctggtggccgtggtggtgggagaggtttcgaaggccgtggtggtggaagagga
ggcagatttaatgcttcttcaaaaggggaattggataacgtggcccttcctagacaggat
tttggagacttggttccgtttgagaagaatttctacattgagagtccttcagtcagggca
atgtcagagcatgaagtaatgctctaccgttcgaggcgggagatcactgttgaagggcac
gatattccgaagccaattcggatgtttgaggaggctaatattcctgattattgtcttgag
gtaattgcaaagttgggctttgcggaaccaactgcaattcaggctcaaggatggcctatg
gctctcaagggcagggatttaattggcattgctgagactggttctggtaagactttggct
tatctgctgccagctttggttcatgtcagcgctcaacctcgattggcttatggtgaaggt
cctattgtgttagtaatagcacctactagagaattagccgttcagattcaagaagaagtt
gtgaagttcagtttacgtgccaatgttaggagtacttgcatatatggtggtgctccaaaa
ggacctcaaattcgtgatcttaaaagaggggttgagattgtcattgctacacctgggcga
ctaattgatatgttggaagctcagcacacaaatttgcgaagagtgacttaccttgtattg
gatgaggctgatcggatgttggacatgggatttgagcctcagataaggaaaattgtggcg
caaatccggccagatcgacagacattgtactggagtgccacatggccaagggaggttgaa
gtcctagcaaggcagtttctgcgtaatccttataaggtagtcattggatcgacacacttg
aaagcaaatcagtctattaaccaaattgttgaagttatgaccgacatggagaaatacaat
aggctgataaaacttcttaaagaagtgatggatggaagtaagattttgatttttattgag
acaaagaaaggatgtgaccaagtaacaaggcaattgagaatggatgggtggcctgctctg
tccatccatggtgacaaaaaccagacagaaagggactgggtccttgctgaatttaagaat
ggcagaagccctataatgactgccactgatgtggctgcacggggtcttgatgtgaaggac
ataaaatttgtgatcaattatgattttccttcaagcctagaggattatgtccacaggatc
ggccgaactggtcgtgcaggagctaagggaacagccttcacatttttcacactagctaat
gtgaaatatgctcgggaattgataaagatcctgcaggaagcaggtcagacagtgagtcct
gcattgtctgctttggcccgatcatctggttctggccatggaggttcaggaggaaacttc
cgctcgagaggacgaggtggtggctttggcaatagatctttgatatccggatcaaatacc
atccctcttggaaatagaagacaatggtag
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