Cannabis sativa (hemp): 115709682
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Entry
115709682 CDS
T08987
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115709682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115709682
03036 Chromosome and associated proteins [BR:
csav03036
]
115709682
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115709682
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115709682
PBAF complex
115709682
GBAF(ncBAF) complex
115709682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
DUF919
Motif
Other DBs
NCBI-GeneID:
115709682
NCBI-ProteinID:
XP_030493706
LinkDB
All DBs
Position
3:42966174..42971869
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AA seq
561 aa
AA seq
DB search
MEQQPDHVRPEQPELDLYTIPSHSSWFLWDEIHDTERIYLKEFFDGSSFSRTPKIYKEYR
DFIINKYREDPSRRLTFTEVRKSLVGDVNLLRRVFLFLEKWGLINFGASSSGGDEDGSEV
LVEEGSKVKTEEGVPNGIRVVAMPNSIKPITAQATTGNNKKEPVHYGVKLPPLTSYTNHF
ADLIKQKELVCGNCGDRCPSGSGYYKYTKGDFLICTKCFKNESYGENKSVEDYTFIESNQ
DSGHHEAVWNESETLLLLESVMKYGDDWELVAQNVPTKNKLDCIAKLIELPLGEILGSAS
ATNKKVNSNDVNGNLNSSKQVELISSENEEIVKTGEQQDEKINAGEQNGDTVEHVPPLKR
QRIDSLSGLGGSLMKKVALLSTEVGPHITAAAAEAAVTALCEEISCPKELFYGDDDSVTN
ELHTRIPDTERVLEVEDAMMEGGPTQSDNQGKSVEKDDIPLTLQVRTAVATALGAAAARA
KLLADQEEREMEHLVATIIGTEMKKLNCKIKHFEDLEVMMKKKHAEMEEMEEILLEERID
VLQKAFTAGIPRWKDHPSVKS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggaacagcaaccggaccatgtccgacccgaacaaccggagctcgacctctacaccatt
ccaagccactccagttggtttttgtgggacgaaatccatgacactgagagaatttatctg
aaagagttctttgatggaagctcattctcaagaaccccaaaaatttacaaagagtatagg
gatttcattatcaacaagtacagggaagatccatctagaaggcttacgttcactgaggtt
cgtaaatctctggtgggtgatgttaatttgctccgtagggtttttctttttcttgagaag
tggggtttgattaattttggtgcatcatcttcgggtggtgatgaagatggttctgaggtt
ttggttgaagaggggtctaaggttaagaccgaagaaggagtaccaaatgggattcgagtg
gttgcaatgcccaattcgatcaaacccattacagctcaagctactacggggaataataag
aaggaaccggttcattatggagttaaattgcctcctcttacatcctatacaaaccatttt
gctgatttaataaaacagaaggagctggtttgtggcaactgtggtgatcgctgtccttct
ggttctggatactataagtataccaagggcgatttcttgatttgcactaaatgtttcaaa
aatgaaagttacggggagaataagtcagttgaagattacacctttattgagtccaatcaa
gacagcggtcatcatgaagctgtctggaatgagtctgaaacactgcttctcttagaatct
gttatgaagtatggggatgactgggaacttgttgctcaaaatgttcccaccaagaacaaa
cttgattgcattgctaaactcattgagctacctcttggggagattttgggctctgcttct
gctaccaataaaaaagttaattccaatgatgtcaatggcaacttgaacagttcgaagcag
gttgaattaatctcatccgagaatgaagaaattgtcaaaactggggaacaacaagatgag
aagataaatgcgggtgaacagaatggagataccgtggaacatgtacctcctcttaaaaga
caacgaatcgattccttatcaggtcttggtggttcactgatgaaaaaggtagctcttttg
tcaaccgaggttggaccccatatcactgctgctgcagctgaggctgctgttactgctttg
tgtgaggagatttcatgtccaaaggagttattttacggtgatgatgattcggtaactaat
gagctacacactcggattccagataccgaaagggtcttggaggttgaagatgcaatgatg
gaaggagggcctactcaatcagataatcagggcaagtcagttgagaaagatgatatacca
ttgacattgcaagttagaacggctgtcgcaacggcacttggtgcagctgctgctcgtgca
aaattattggctgatcaagaagaaagggagatggagcatctagtggcaactataattggg
actgagatgaagaagttgaattgcaaaatcaagcattttgaagacttggaggtaatgatg
aagaagaagcatgctgaaatggaggaaatggaagagattcttttagaagagcgaatcgat
gttttacaaaaggcatttactgctggtatacctagatggaaggatcacccttctgttaaa
tcttag
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