Cannabis sativa (hemp): 115709732
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Entry
115709732 CDS
T08987
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115709732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115709732
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115709732
Spliceosome [BR:
csav03041
]
Complex C
Other components
Step II factors
115709732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
SLFN-g3_helicase
AAA_30
AAA_24
Flavi_DEAD
ABC_tran
AAA_16
T2SSE
Sigma54_activ_2
ATPase
NB-ARC
PhoH
AAA_7
TsaE
SRP54
MMR_HSR1
cobW
Motif
Other DBs
NCBI-GeneID:
115709732
NCBI-ProteinID:
XP_030493773
LinkDB
All DBs
Position
3:complement(42773378..42781843)
Genome browser
AA seq
1294 aa
AA seq
DB search
MEKRANTELVDVDKITETMEAENASGGGLYLPGKDRVVFKPPERKSLLGLDTLASAKRGE
SKADGGFKAPRERVVSVAASMEEEENSVSVVTDDSRSNTSTSMRNPSRRQYREVAANETT
YRESTDDDAFGSSSFRERQHSDVSTISTRSSQSIPSRSPRYDRDDRVRDRREHRDHYDRD
DRDGGRRDYRDDRRVRQGHGNGSKNQYYGRESSDRYEPVYSGDNERKRSRYENSTRGSGR
SNWDDGKWEWEDTPRRDSYSNSSRRHQPSPMFVGASPDARLVSPWLGGNTPHSNGSNVSS
WDNISPSPAPIRASGSSVRSSNSRHSGKSHQITFSTNNSQSNEDEEAEMTDLAEEQKYEI
SESMRQEMEYNSDRAWYDREEGNAMFDADSSSFFFGDEATLQKKEAELAKRLVRRDGTKM
TLAQTKKLSQRTADNAQWEDRQLLRSGAVRGTEVQTDFDDEDERRVILLVHDTKPPFLDG
RVVYTKQAEPIMPIKDPTSDMAIISRKGSGLVREIHEKQSMNKSRQRFWELAGSKLGDIL
GVEKTAEQIDADTAAVGEDGEIDFKEEAKFAQHLRKEEAASDFAKTKTLAQQRQYLPIYS
VREELMQTIRENQVVVIVGETGSGKTTQLTQYLHEDGYTVNGIVGCTQPRRVAAMSVAKR
VSEEMETDLGDKVGYAIRFEDVTGPNTKIKYMTDGVLLRETLKDAELEKYRVIVMDEAHE
RSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAEKFADFFGSVPVFKIPGRTFPVNILYS
KSPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQLISTTKKGVP
KLLILPIYSQLPADLQAKIFEKAEEGERKCIVATNIAETSLTVDGIYYVIDTGYGKMKVY
NPRMGMDALQVFPVSRAAADQRSGRAGRTGPGTCYRLYTENAYLNEMLPSPVPEIQRTNL
GNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPL
DPPLAKMLLMGERLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFIPESDHLTL
YNVYQQWKQHQYRGDWCNDHYLHVKGLRKAREVRSQLLDILKTLKIPLTTSWPDTDIVRK
AICSAYFHNSAKLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPEYVVYHELILTSKEYMQ
CATAVEPQWMAELGPMFFSVKDSDTSLLEHKKKQKEEKTAMEEEMESLRKEQAEAERRNK
EKEMKKRAKQQQAVSQPGLPKGSSTYLRPKRFGL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcgtgcaaatactgagcttgttgacgtagacaagataacagaaacaatggaa
gctgaaaacgccagcggaggcggtttataccttcctgggaaggatagagtggtatttaaa
cctccagagaggaaatccctcttagggctggatacactagccagtgcaaagaggggggag
tctaaggctgatggtgggttcaaagcccctagagaaagagttgtttctgttgcagcatcc
atggaggaagaggagaactctgtatctgttgtaacagatgattctaggagtaatacctcc
acgagcatgcggaatccttctaggagacaatatcgtgaagtagctgcaaatgagacaacc
tacagagaaagtacagatgatgatgcatttggctcttcaagtttcagagaacgtcaacat
tcagatgtttcaaccatatctacgcgaagctcccagagcatcccatctagaagccctagg
tatgatagggatgaccgtgttcgtgacagaagagagcatagagatcattatgatagggat
gaccgtgatggtgggagaagagactacagggatgacaggagggtaagacaaggacatggt
aacggcagtaaaaatcaatattatggaagagaatcatctgatcgttatgaaccagtgtat
agtggagataatgaaagaaagagaagtagatatgaaaattcaacaagggggtctggcaga
tcaaactgggatgatgggaaatgggaatgggaggacacaccgcgtcgagatagttattct
aattccagcaggcgccatcaaccgtcccctatgtttgttggggcctcaccagatgcaagg
cttgtttccccatggttgggtggcaacaccccccattccaacggctctaatgtttcttcc
tgggacaatatctcgccctcaccagctcccatacgtgcttctggatcctcagttagatct
tcaaattctagacatagtgggaagtctcatcaaatcactttttctacaaataattcacaa
tcgaatgaggatgaggaagctgagatgactgatttagctgaagagcagaagtacgagatt
tctgaaagcatgcgccaagagatggaatacaattctgatcgtgcctggtatgaccgagaa
gaaggtaatgctatgtttgatgcagatagctcatcatttttctttggtgacgaggcaact
ttacaaaagaaagaagcagagctagccaaaaggctggttcgaagagacggcactaaaatg
acacttgctcaaaccaaaaaattgtctcaacgcactgctgataatgctcagtgggaggac
aggcaactattgagatctggtgctgttcgtggcactgaggtacagactgatttcgacgat
gaagatgaacgcagggttattcttcttgtgcatgatacaaaacctcctttcttggatggg
agggttgtttataccaagcaagcagagccaataatgccaattaaggatcccacatctgat
atggctataatttcacgcaaaggatctggtttggttagggaaatccatgagaaacaaagt
atgaacaaatcacggcaacgcttttgggagcttgctggctctaaacttggtgatatcctt
ggtgttgagaaaacggcagagcagattgatgcagatactgctgcagttggtgaagatggt
gaaattgattttaaggaagaagcaaagtttgcacaacatttaaggaaggaggaagctgcg
agtgactttgcaaagacaaaaactcttgctcagcaacggcagtatctgccaatctattca
gtgcgagaggaattgatgcagacaatacgtgaaaatcaagttgttgttattgttggagaa
actggttcaggaaagacaactcaattgacacagtatctacatgaagatggctacactgtt
aatggaattgtaggatgcacccaacctaggcgtgtggcagcaatgagtgttgcgaaaaga
gttagcgaagagatggagactgatttaggagataaagttggttatgctattcgttttgag
gatgtgacagggccaaatactaaaataaagtacatgacagacggagtacttctgcgtgag
actcttaaagatgctgaacttgagaagtatcgtgtcattgtgatggatgaagcccacgag
aggtctctgagcacagatgttctgtttggaattttgaagaaggttgttgctcaacgtcgc
gattttaagctcattgtgacatctgctactctcaatgccgaaaaatttgcagattttttt
ggaagtgttccagtttttaaaattcctggaaggacatttcccgtaaatatactgtacagt
aaaagcccatgtgaggattatgttgaagccgccgttaaacaagcgatgactatccatatc
accagcccgccgggggacattcttatctttatgactggccaagatgagattgaggcagcc
tgctatgctctagcagagcgtatggaacaacttatctcaacaacaaagaaaggggttccg
aagctcttgatacttccaatatattcacaacttcctgctgatttacaagcaaaaatattc
gaaaaagccgaagagggagagcgcaagtgtattgtggccaccaacatagctgagacatct
ttgacagtggatggaatatactatgtcattgacaccggatatggtaaaatgaaggtgtac
aaccctagaatgggtatggatgctctgcaagttttcccagtgagccgtgctgctgctgac
cagcgttctggacgagctggaagaactggcccaggaacatgttatcgactgtacacagag
aatgcatacctcaacgaaatgcttcccagtcctgtgccagagattcaaaggaccaatctt
gggaatgttgtcttgttgctcaaatctctgaaagttgaaaatttactagattttgatttc
atggatccacctccccaagacaatattcttaattctatgtaccagctgtgggtcttgggt
gctcttaacaatgttgggggcttgactgaacttgggtggaaaatggtggagttcccatta
gatcccccacttgctaagatgctcctaatgggggaacggttgggatgcttagatgaggtt
ttgactattgtatctatgctttcagtgccatcagtatttttcaggccaaaagatagggca
gaggagagtgatgctgcacgcgaaaaattctttatcccagagtctgaccacttgactctc
tacaatgtgtatcagcaatggaaacaacatcaatacaggggagactggtgtaatgaccat
tatttgcatgttaaagggttacggaaggcgagggaggtgaggtcgcagctgctagatatt
ttaaagacgttaaaaattcccttaacaacttcatggcccgatacagacattgtgagaaaa
gctatttgctctgcatattttcacaactcagccaaactaaagggcgtgggagagtatgtc
aattgcaggaacggtatgccttgtcatttgcatcctagcagtgctctctatggcatgggc
tgcacacccgagtatgtggtttatcacgaattgattctaacaagcaaagagtacatgcaa
tgtgctacggcagtggagccccaatggatggctgagctaggacccatgttcttttctgtt
aaggactctgatacatcattattggagcataagaaaaagcagaaggaagagaaaacagcc
atggaagaagagatggagagtttaagaaaggagcaagccgaggcagagagacggaacaag
gaaaaggagatgaagaagagagctaagcagcagcaagccgtgtctcaaccggggttgcca
aagggctcttctacctatctgagaccgaagaggtttgggttgtaa
DBGET
integrated database retrieval system
