Cannabis sativa (hemp): 115709819
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Entry
115709819 CDS
T08987
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115709819
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
csav01002
]
115709819
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115709819
03036 Chromosome and associated proteins [BR:
csav03036
]
115709819
Peptidases and inhibitors [BR:
csav01002
]
Metallo peptidases
Family M1
115709819
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115709819
Coactivators
SAGA/TFTC/STAGA complex
115709819
Chromosome and associated proteins [BR:
csav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115709819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
DUF5560
Motif
Other DBs
NCBI-GeneID:
115709819
NCBI-ProteinID:
XP_030493910
LinkDB
All DBs
Position
3:75636861..75654444
Genome browser
AA seq
1542 aa
AA seq
DB search
MAKPRKPKNEDASNKPENSGPVVRHQKLCLSIDLDKRHVYGYTELEIVVPEIGIVGLHAE
NLGIDNVYVDGEPAEFEYYPHNYQFTENESRWCYVTSPITAADAAGSAYISALERELVPN
LLINCYKSFKTGGEQQEQPVLENGVQQASGEIKQNVRLVRVNYWVEKAETGIHFDGNVFH
TDNQIRRARCWFPCIDDTLQRCCYDLEFTVAQNLVAVSSGNLLYQVLSKDDPPRKTYVYK
LDVAVSAQWISLVVGPFEVFPDHQSCVISHMCLPVHLSKLRSTVEFFHSAFSCYKDYLSV
NFPFGSYKQVFIEPEMAVCSLGLGASMSIFSSQILFDEKIIDQTIDTRIKLACALAQQWF
GVYITPETPNDEWLLDGLAGFMADFFIKRCLGNNEARYRRYKANCAVCKADDNGATSLSS
SASSKDLYGTQSIGLYKKIRSWKSVAILQMLEKQMGPESFRKILQTIVSRAQDKTRSMRS
LSTKEFRHFANKVGNLERPFLKEFFPRWVESCGSPLLRMGFSYNKRKNMIELAVLRGCTA
VPDSSASVVNGRPESENRDSEVGWPGMMSIRAHELDGTFDHPVLPMAGETWQLVEIQCHS
KLATRRFQKPKKGTKLDGSDDNGDGTLPLDMRSSMDSPLLWMRADPEMEYLAEIHFNQPI
QMWINQLEKDRDVIAQAQAIAMLETSPQLSFNIVTALNNFLTDSKAFWRVRIEAAFALAN
TASEETDWAGLLHLVKFYKGRRFDADIGLPKPNDFHDFAEYFVLEAIPHAVAMVRTADRK
SPREAVEFVLQLLKYNDNNGNPYSDVYWLAALIQSVGELEFGQQSILLLSSLLKRIDQLL
QFDRLMPSYNGILTVSCIRTLTQIALKLSGFVPLDRIVDLLKPYRDLKAIWPVRIEASRA
LLDLEFHCGGIDAALSLFIKYIEEEPSLRGQEKLGVHAMRLCQIRVGSNSNDDIRSHTLV
NMLHLLEGRISFNNIFLRHHLFCILQILGGRPPTLYGVPRDHRPFHMGDVEAWHEQKNMF
SSFLPEIKLPSEPQNLPHNTFVLSEASDAMFSVPEASKNGLAVLQDPGDGLAVSEAHKDV
SSVSEAFKEDFSGRDAFKDGVLYVSEAFKEDFSVQESSKDGLSVVEAPNDGLSVVEAPKD
GLSVVEAPKDGLSVVEAPKDGLFVVEAPKDDFSVVEASRDLVAVPETSNDGLAAPESSKG
GLSAPEPLKDGLAAPEPLKDGLAAPEPLKDGSAAPEPSRDVSEASKDGLAIPELSKEADT
ISTSHGRKRPVVKIRMKRSTATSRATEFDNLNLERSQGGHYEIDRGASSSMSVDAPHRTF
AEAVSISTQNLEEVNSCYDRGSRMTASIGSAKLVSDADDVGKELQCTADSSKVSGLGQPD
DPSSSSFIQDNNVDAGAQKFASLQALSDSRHGHGKEKEKKKKKDKDKKRKREDHKGHKDD
PEYLEKKRLKKEKKKKEKEMAKSSSLHDQAKVSSVVEQINKKEELKIKSSTVEAKPIVSS
GSKLVIPAAVRVENKPDASTQGTTSVAPKIRIKIKSRTINKS
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcgcaaaccgaagaatgaagacgctagcaacaagcctgaaaactctggg
cctgttgttcgtcaccagaagctttgcctttccattgacctcgacaagcgtcacgtctat
gggtacactgaactggaaattgtggttccggagattgggattgtaggattacacgcagag
aatttagggattgataatgtttatgtggatggtgagcctgcggaattcgaatattacccc
cataattatcaatttacggagaatgagagcaggtggtgctacgttacatctccgatcact
gctgcggatgctgctggctcggcttacatatctgctttggaaagagaattggtaccgaat
ttgttgattaattgctacaagtcattcaagacgggaggtgaacagcaagagcagccagtt
ttggagaacggggtgcaacaagcctctggagaaattaagcagaatgtgagattggtccgc
gttaattattgggtagagaaagcagagacagggattcactttgatggcaacgtgtttcat
acagataaccagataagacgtgctcgctgctggttcccttgtatagacgacacattgcag
cgctgctgctatgatctagagtttactgttgcacaaaatcttgtggctgttagttcggga
aatttgctataccaggttttgagcaaggatgatcctcctcgcaaaacatatgtctataaa
ctagatgttgcagttagtgctcagtggatatctctagtagttggaccttttgaagttttt
cctgatcaccaatcttgtgtaatatcacatatgtgcttacctgttcatttatcaaagctt
cgaagtactgtggaattttttcatagtgcgttcagttgttataaggactatttatcagta
aacttcccatttgggtcatacaaacaagtttttatagaaccagagatggcagtgtgctca
ctaggcttgggagcctccatgagcatttttagctctcaaatattattcgatgagaagatc
attgatcagacaatagacactaggattaaacttgcctgtgcccttgctcaacagtggttt
ggtgtttatatcactcccgagacaccaaatgatgaatggcttctcgacggtcttgctggt
tttatggcggatttttttatcaaaaggtgtttaggaaataatgaggcacgctacaggaga
tacaaggcaaattgtgccgtatgcaaagcagatgataacggtgctacatctttgagctcc
tctgcttcttctaaggatttgtatggcactcaatccattggtctatacaaaaaaataaga
tcatggaaatctgtggcaatccttcaaatgttggaaaagcaaatgggacctgagtccttc
cgaaaaattctgcagactatagtttctcgggcgcaggataagactcgttcaatgaggtct
ctcagtacaaaggagtttcggcatttcgctaacaaggttggaaatcttgaacgtccattt
cttaaggaattttttcctcgttgggtggaatcatgtggctcaccactgctaaggatgggg
ttctcctataacaagcgaaagaacatgattgaattagccgtattacgtggatgtactgct
gttccagattcaagtgcatctgttgttaatggtaggcctgaatctgaaaaccgagatagt
gaggttggatggcctgggatgatgagtattagggctcacgaacttgatgggacatttgac
cacccagttctgccaatggctggagaaacatggcagttagtggaaatacagtgccattca
aagcttgccactagacgctttcagaaacctaaaaagggtacaaaacttgatggatctgat
gacaatggagatggtactcttcctctagatatgcgctccagtatggactcgcccttgtta
tggatgcgagcagatccagaaatggagtaccttgctgaaattcattttaatcaacctata
cagatgtggattaatcagttagagaaggacagagatgttattgctcaggcgcaagcaata
gcaatgctagagacatcaccacagctatcatttaacattgttactgctctcaataatttt
ctcactgactcgaaggccttttggagagttcgaattgaggcagcatttgcattagctaat
acagcatctgaggaaactgattgggcaggtttacttcacttggtgaaattctacaagggt
cggcggtttgatgcagatattggacttcccaagccaaatgacttccatgactttgctgaa
tactttgttcttgaggccattccacatgcagtagctatggttagaacagcagataggaaa
agcccaagagaggcagttgaatttgttttacagctgttgaagtataatgacaataatgga
aatccttactctgatgtttattggctcgctgcattgattcagtcagttggcgaacttgaa
tttggacaacagagtattcttcttctatcgtcccttctcaagcgcattgaccagcttctg
caatttgacaggctgatgccaagttataacgggatattgacagttagctgcattaggact
ttaactcagattgcgctgaagctttctggtttcgtccctctcgaccgcattgttgatctc
ttgaaaccgtatagggatttaaaggcaatctggccagttcgcattgaagctagtagggct
ttacttgatctagagtttcactgtggaggcattgatgcagctttgtctttgttcatcaaa
tatatagaggaagagccgtctttgagagggcaggagaaattgggcgtgcatgctatgaga
ttgtgtcagataagagttggatctaattctaatgatgacataagaagccatactcttgtg
aatatgctccatctacttgagggacggatttcattcaacaatatctttcttcgtcaccac
ctgttctgtatcttacaaatccttgggggaaggccaccgacactttatggggttccaagg
gatcataggccatttcatatgggtgatgtagaagcctggcacgagcagaaaaacatgttc
agctcttttcttccagaaatcaaactaccatctgaacctcagaaccttccacacaacact
tttgtcttgtcagaagcttctgatgcaatgttttctgtcccagaagcttctaagaatggt
ttggctgttctacaagatcctggcgatggcttagctgtttcagaagctcacaaggatgtt
tcatctgtttcagaagctttcaaggaagatttttctggtcgggatgctttcaaggatggt
gttctctatgtttcagaagccttcaaagaggatttttctgtacaggagtcttccaaggat
ggtttgtctgttgtggaagctcccaatgatggtttgtccgttgtggaagctcccaaggat
ggtttgtccgttgtggaagctcccaaggatggtttgtccgttgtggaagctcccaaggat
ggtttgtttgtcgtggaagctccgaaggatgatttttctgtcgtggaagcttcaagggat
ttggtggctgttcctgaaacctccaatgatggtttggctgctccagaatcttccaaaggt
ggcttgtctgctccagagcctttgaaagatggattggctgctccagagcctttgaaagat
ggattggctgctccagagcctttgaaagatggatctgcggctccagaaccttccagggat
gtttctgaagcttccaaggatggtttggcaattcccgagctttctaaggaagctgataca
atttctacgagtcatggacggaagaggccagttgttaaaatcagaatgaaaagatctact
gctacaagtagagcaacagagtttgataatcttaatcttgaaagatcccagggcggacat
tacgaaattgatcgcggggccagcagttcaatgtctgttgatgcgccccacagaactttt
gcagaagctgtgagtattagtactcaaaatcttgaagaagtcaactcatgctatgatcgt
gggtccaggatgactgctagtataggcagtgcgaaacttgtgagtgatgctgatgatgtg
ggcaaggaactccaatgcacagctgattcaagcaaggtttccgggctaggtcaaccagat
gacccatcatcatctagcttcatccaggacaataatgtagatgccggtgcacaaaagttt
gcaagtcttcaagctctgtcagattcaaggcatggtcatggaaaagaaaaggagaaaaag
aagaagaaagacaaagacaagaaacggaagcgggaagaccataaagggcacaaggacgat
cctgagtatttggaaaagaagcggctgaaaaaggagaagaagaagaaggaaaaggagatg
gccaagtcctcttctttgcacgaccaggccaaggtatcctctgtagtagaacagataaat
aagaaagaggaacttaagatcaaatcatcaactgttgaagcaaaaccaattgtatctagt
ggatccaaattagttatcccagcagcagtaagggttgagaataagcctgacgcctcaaca
caaggcactacttctgttgctcccaaaattcgaataaaaataaaaagcagaacgatcaac
aaatcatag
DBGET
integrated database retrieval system
