Cannabis sativa (hemp): 115710054
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Entry
115710054 CDS
T08987
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115710054
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115710054
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
115710054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
T2SSE
Helicase_PWI
Tc-R-P
Motif
Other DBs
NCBI-GeneID:
115710054
NCBI-ProteinID:
XP_030494233
LinkDB
All DBs
Position
3:complement(65515764..65551501)
Genome browser
AA seq
2090 aa
AA seq
DB search
MLVQLPRLTNSLREPFDVDHAYLQRRLILHNHIHKPTNSASSVDESELARKIVYRWEEAS
VELRQAYKQFIGAVVELIDGELPSEEFREVALSVYCLFGAQEETFDGSIAEKKAELQKLI
GRAVSDSNLRKSASLAYKLFALQPIDHKKAITLEGSTNESSDNIEFGADLVFQAPARFLV
DKSFEDVLAEESSASSSLRHEGWYGRPEFIPEYSVSDEGRFNLTWLRDACDQIIEKSLSQ
LSRDELAVAICQVLYSDKPGEEIAGDLLDLVGDSEFEIVQDLISHRKDLVECIHHGLLIL
KSEKASSTTQPRMPSYGTQVTVQTESGKQIDKLRRKEEKRHRRGAEYGAEGDLSTVSFSS
LLQASEKRSPFDDLIGSGQGNQSLPVTALPQGTVRKHHKGYEEVIIPPTPAAQMKPGEKL
IEIKELDDFAQAAFRGYKSLNRIQSRIYQTVYYTNENILVCAPTGAGKTNIAMISILHEI
GQHFKDGYLHKNEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVKELTGDMQLSKNELEE
TQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVEST
QSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEQNFAARNE
LLNEICYKKVVESLRQGHQAMVFVHSRKDTAKTAEKLVELARRFEDLELFSNDTHPQSSL
IKKEVLKSRNKDLVELFGFAVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNL
PAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITFHDKLAYYLR
LLTCQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRQNPLAYGIGWD
EVMADPTLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETY
NEMLRRHMSDSEVIDMVAHSSEFENIVVREEEQNELETLARTSCPLEIKGGPSNKYGKIA
ILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRKGWCEMTLFMLEYCKAVDR
QIWPHLHPLRQFERDISSEVLRKLEDRGADLYRLQDMQEKDIGALVRYSPGGKVVKQYLG
YFPWIQLSATISPITRTVLKVVLLIAPDFIWKDRFHGTAQRWWILVEDTENDHIYHSELF
TLTKRMSKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQAEAFYTISFSNLALPEARTSH
TELLDLKPLPVTALGNSTYEALYKFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGKTISA
ELAMLRLFNTQPDMKVIYIAPLKAIVRERMNDWRKGLVRQLKKEMVEMTGDYTPDLTALL
SADIIISTPEKWDGISRNWHSRNYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQ
TDRAVRFVGLSTALANASDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPAYAAICTHSSTKPVLIFVSSRRQTRLTALDLIQFAASDEQPRQFLSMAEEALQMV
LSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE
PFPVESSLREQLHDHMTAEIVSGTICHKEDAVHYLTWTYLFRRLMMNPAYYGLETREPEI
LSSYLSRLVQTTFEDLEDSGCIKINEDSVEPTMLGSIASQYYLSYMTVSMFGSNIGPDTS
LEVFLLILSGASEYNELPVRHNEENYNEALSKKVRYMVDKDRFDDPHVKANLLFQAHFSQ
LELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEKNSS
LWMLPCMNVELADSLSTRGVSSLPQLLNFSKATLQTMIGNVPASKLFQDLQYFPNLQVKL
RIQQRKTGSASSPSLNIRLEKRNSRRKGSRAFAPRFPKVKDEAWWLILGNTSSSELHALK
RVSFSDHLVTHMELPSDPTAVQGMKLILVSDCYLGYEQEHSLAELQTARN
NT seq
6273 nt
NT seq
+upstream
nt +downstream
nt
atgctggttcagcttccgcggttgaccaactctttgcgagaacccttcgatgttgaccat
gcctatttgcagcgcaggcttatcctccataatcacatccacaagcctaccaattctgcg
agctcagtcgacgagtcagagcttgcgaggaagatagtttatagatgggaagaagcttcg
gtggaacttcgacaagcttacaagcaatttattggagcggttgtagagttgatagatgga
gaactgccatctgaggagttcagggaggtggctctaagtgtttactgtctttttggtgcg
caagaggaaacttttgatggaagtattgctgagaagaaggcagagttgcaaaaacttata
ggccgtgctgtttctgatagtaacttgaggaagtccgcatccttagcatataaacttttc
gcactacaacctattgaccacaagaaagcaatcactttagaagggtcaactaatgagagt
tctgacaatattgaatttggtgctgaccttgtttttcaagccccagctcggttcttggtg
gacaaatcttttgaggatgtgttggctgaagaaagcagtgcatcttcttctttacgccat
gagggatggtatggtcgtcctgaatttattccggaatattcagtctctgatgaaggacgt
ttcaatttaacttggttaagagatgcttgtgatcagataattgaaaaaagtctttcgcag
ctttctcgagatgaattagcagtagctatttgtcaggtcctttattcagataaacctggt
gaggagatagctggtgatttattggatcttgttggagatagtgagtttgaaatcgttcaa
gaccttatatctcataggaaagatcttgttgaatgtattcatcatggtttactcatcttg
aaatctgaaaaagcatcctcaaccactcaaccacgtatgcctagttatggcactcaggtt
actgttcaaacagaatctggaaagcaaattgataaacttcggcgcaaggaagaaaagcga
catagacgaggagcagaatatggggctgagggtgacttgtctactgttagtttttcttct
ttgcttcaagcaagtgagaagagaagtccttttgatgatctcattgggtctggccagggg
aaccaatcactaccagttactgctcttcctcaaggaactgttaggaaacatcacaaaggg
tatgaggaagtcattattccccctacaccagcagcacaaatgaaaccaggtgaaaagctg
attgaaataaaggagttagatgattttgcccaagctgcttttcgtggctacaaatctctc
aatcgcattcagagccgtatttatcaaactgtttattacactaatgagaatatattggtt
tgtgctcctactggagctggtaaaacaaatatagcaatgatttctattttacatgagatt
gggcagcatttcaaggatggctacttgcacaaaaatgaatttaagatagtttatgttgct
ccaatgaaggcattagcagctgaggttacatcaacatttagtcatcgtttatctccattg
aacatgacagtgaaagaactaactggagatatgcaactttctaagaatgaacttgaagaa
actcagatgatagttacaacaccagagaaatgggatgtcattactcgcaagagtagtgac
atgtcactgtcaatgcttgtgaagctcttaattattgatgaagtgcatttattgaatgac
gatagaggccctgtaatagaggcacttgttgctcgaactttgcgtcaggtagagtcaaca
cagtcaatgataagaattgtgggactttcagccactctacctaattatttggaggttgca
caatttcttagagtgaatccagatacaggactctttttctttgactctagctatcgtcct
gtgcctcttgcacaacagtatattggtattagtgagcagaactttgcagctcggaatgag
ttattgaatgagatatgttataaaaaggttgttgagtcattgaggcaaggtcatcaagca
atggtatttgttcattctcggaaggacacagcaaaaacagctgaaaaattggttgaactt
gctcggagattcgaggacctggagctttttagcaatgatacacatccacagtcatcctta
ataaagaaagaggttctaaagtcaaggaacaaagatcttgttgaactttttggatttgct
gttggtgttcatcatgctgggatgttacgtgccgatagaggtctgactgagcgtcttttt
tctgatgggctcttgaaggtgcttgtctgtacagcaactttggcatggggtgtaaatctg
cctgctcacactgttgtgattaaggggacccaattatatgatccaaaggctggtggttgg
cgagatctaggaatgctagatgttatgcagatatttggaagggccgggagacctcaattt
gacaaaagtggtgaaggcatcataatcacgtttcatgacaaactagcttattatcttcgc
ttattaacatgtcagctcccaatagaaagtcagtttattagctccttaaaagacaattta
aatgcagaagtagcactgggcactgtgacaaatgtcaaggaagcttgtgcgtggcttggg
tatacttacctttttattaggatgagacagaatcctttggcatacggtattggctgggat
gaggtcatggccgatccaactttgagcttaaagcaaagagctcttgtaacagatgctgca
cgtgctcttgacaaagcgaaaatgatgcgatttgatgaaaaaagtggcaacttttactgt
acggagctgggccgcattgctagtcacttttacattcaatattctagtgttgaaacttac
aatgaaatgctaagacgacatatgagtgacagcgaggtgattgacatggttgcccattct
tctgaatttgagaatattgttgttcgagaagaggaacagaacgagctggaaacgttggca
cgtacatcctgtccgttagagattaagggtggtccttcgaataaatatgggaaaattgct
attctcatccagctatacatatctcgtggctcaattgatagcttttctttggtttccgat
gctgcttatataagtgcaagcttggctcgtattatgcgggctctatttgaaatttgttta
cgcaaaggttggtgtgagatgaccttgttcatgttggaatattgcaaggccgtggatcgc
caaatttggccccatctgcatccactcagacaatttgagagagatatttcgtcagaggta
ctgcgaaagctggaggatagaggagctgatttatatcgcttgcaagatatgcaagaaaaa
gatattggggcacttgttcgttattcacctggaggaaaagtggttaagcaatatttagga
tatttcccatggatccagttatcagcaactataagtccaataaccagaactgttttgaag
gtggttttactcatagcaccagatttcatatggaaagaccgttttcatggtactgcacaa
cgttggtggattcttgttgaggatacggaaaatgatcatatctatcactcggagcttttt
accctaacaaagcgaatgtcaaaaggggaaccacagaagctttcattcacagtgcctata
tttgaaccacatccaccacaatactacattcgtgctgtttctgattcttggttgcaagca
gaggctttctataccatatctttctcaaaccttgcacttcctgaggcccgcacttcccac
acagaactactagatttgaaacctcttcctgtgactgcacttggaaacagtacctatgaa
gccttgtacaaattttcacattttaatccaatacaaactcaggcttttcatgttctatac
cacacagataataatgttctattaggagctcccactggaagtggaaaaactatatcagct
gagctggctatgcttcgcctcttcaacactcagcctgatatgaaggttatctacatagca
cctttgaaggctattgttcgcgaaagaatgaatgattggagaaaagggcttgttcgccag
cttaagaaggagatggttgaaatgactggagattatactccagatttgacagctctcttg
tcagcagatatcattatatccactcctgaaaagtgggatggtattagtcgtaattggcat
agtcgaaattatgtgaaaaaggttggtctagtaattttggatgagattcacttattgggg
gctgatcgtggacccatccttgaggttattgtgtcacggatgagatacatatcatcacaa
actgatcgtgcagtacgatttgtgggtctctctacggctttagcaaatgcaagtgacttg
gctgactggctgggtgttggtgaaattggactcttcaactttaaaccaagcgtgaggcct
gttcctcttgaagttcatatacaaggatatcctggaaagttctattgcccaaggatgaac
agtatgaataaaccagcgtatgctgcaatatgcacacattcttctacaaagccagttcta
atatttgtttcatctcgtcgacagacaagacttactgccttggacctcattcagtttgca
gcatcggatgagcaacccaggcagtttcttagtatggccgaagaagcacttcagatggta
ctatcacaggttactgatcagaacctgcgacacaccttacaatttggaattggattacac
catgctggtctgaatgacaaagatagatctctagttgaggaattgttttcaaacaataag
attcaggttttagtttgtaccagtactttggcttggggtgtaaatcttccggcacatctg
gttattatcaagggaactgagtattatgatggcaaaacaaagagatatgttgatttccca
atcacagatatcttgcaaatgatgggtcgtgcaggtcgtccacaatatgatcagcacggg
aaagcagttattcttgttcatgaaccgaagaagagtttctataagaagtttttatatgaa
ccatttcctgttgagagtagtctgagggagcagttgcatgatcacatgaccgcagaaata
gtttctggaacaatttgccataaggaggatgcggttcactatcttacttggacttactta
ttccgaagactgatgatgaatcctgcttactatggtttggaaaccagggaacctgaaatt
ttaagttcttacctgtcaaggttagtgcaaacaacctttgaggacctggaagacagtgga
tgcatcaagatcaatgaagacagtgtggagccaacgatgctgggctctatagcatctcaa
tattacctgagttacatgactgtatcaatgtttggatcgaacataggtccagacacgtca
cttgaagtgtttttacttattctttctggtgcgtctgaatacaatgagcttcctgtgcgg
cataatgaggaaaactacaatgaagctttgtccaagaaagttcggtatatggtggacaag
gatcggtttgatgatccacatgtcaaggccaatctgctatttcaggcacatttttcacag
ttagaattgccaattagtgactatgtcactgacctaaagtcagtcttggatcaaagtata
cgcataattcaggccatgatagatatatgtgctaatagcggatggctttcaagctcaatt
acttgcatgcatcttttgcaaatggtcatgcagggtttatggtttgagaaaaattcttct
ttatggatgctgccatgtatgaatgttgaacttgcggattccttaagcacaagaggagtt
tccagtttgccacaactattgaatttctcaaaggcaaccttgcagaccatgataggaaat
gttcctgcttcaaaattatttcaggatctgcaatatttccccaatctccaagtaaaatta
agaattcagcagaggaaaactggcagtgcaagctccccatctttgaacatcagattggag
aagagaaattccagacgaaagggatcaagagcttttgctcctcgctttcccaaggtaaaa
gatgaagcctggtggttaattcttggtaacacctctagctctgagttgcatgctctcaag
agagtgtctttctctgatcacttggttacccatatggagttgccatcagatccaactgct
gttcagggaatgaagctgattctagtttcagattgttaccttggttacgaacaagagcac
tcccttgctgaacttcaaaccgccaggaactaa
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integrated database retrieval system
