Cannabis sativa (hemp): 115710251
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Entry
115710251 CDS
T08987
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03030
DNA replication
csav03420
Nucleotide excision repair
csav03430
Mismatch repair
csav03440
Homologous recombination
csav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115710251
03420 Nucleotide excision repair
115710251
03430 Mismatch repair
115710251
03440 Homologous recombination
115710251
03460 Fanconi anemia pathway
115710251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csav03000
]
115710251
03032 DNA replication proteins [BR:
csav03032
]
115710251
03400 DNA repair and recombination proteins [BR:
csav03400
]
115710251
Transcription factors [BR:
csav03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115710251
DNA replication proteins [BR:
csav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115710251
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115710251
MMR (mismatch excision repair)
115710251
DSBR (double strand breaks repair)
HR (homologous recombination)
115710251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
115710251
NCBI-ProteinID:
XP_030494466
LinkDB
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Position
3:66320856..66324446
Genome browser
AA seq
624 aa
AA seq
DB search
MAVKAPTPDAISTILANPSPDTSSEMPDIVVQVLDLNAKGNRYMFTASDGKKKLKGILPS
HITPQVISGDIQNLGLIRILDYSLNDIPSKSEKYVIVTKCETVSPPLEVEIKEEIKSEGV
GILLKPKQEDEIKSEVKRADAGVFLKPKQEIISKSAAQIVHEQHGNMAPAGRMAMTRRVH
PLVSLNPYQGSWTIKVRVTNKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNEAARK
FYDKFELGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVSSEAAFVPETKFNFV
PIDMLGPYVSGKELVDVVGVVQSVSPTMSIRRKSNNETIPKRDITIADESKKTVVVSLWN
ELATTVGQQLLDIADQSPVVAIKSLKVGDFQGLSLSTLSRSMLMVNPDIPEAKNLKSWFD
SEGKEASLASVGSGMSPSARNGARSMYSDRVSLSHITENPSLGDDKPVYFSIRAYISFIK
PDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECCLRYILVIKASDASGEAYVSAFN
DEAERIIGCSADELNTLKQEVGEDNMFEQKLKQATWVPHLFRVSVSQNEYNNEKRQRLTV
RAIAPVDYAAESKFLLEEISKMRA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgaaagcacccaccccagatgcgatttcaactatactcgccaatccttcgccc
gacacctcctcagagatgccggacatcgttgtccaagtcctcgatctcaatgccaagggt
aaccgatacatgtttactgccagtgatggaaaaaagaagctgaaaggaattctaccatca
catattactcctcaggttatctcaggagacattcagaatctgggtcttattcgtatcctt
gattattctctcaatgacattccaagcaaatcagaaaagtatgtaattgttaccaagtgt
gagacagtttctcctccacttgaagtagagatcaaggaagagatcaagagtgaaggagtt
ggcattctcttgaaacctaaacaagaggatgagatcaagagtgaggtgaaaagagcggat
gctggtgttttcttgaagcctaagcaggaaatcatttctaaatcagctgctcaaatcgtt
catgagcagcatggaaatatggctccagctggacggatggccatgacacgcagagttcat
ccccttgtttctttgaatccttatcaaggcagttggacaattaaggtccgggttacaaac
aagggtaacatgcgtacatataaaaatgctagaggtgaagggtgtgtgtttaatgtggag
ttgacagatgaagaaggaacccaaattcaagcaactatgtttaatgaagctgcaaggaag
ttttatgataagtttgaattagggaaggtttattatatttcaaagggaactcttaaagtt
gctaacaagcagtttaagacagtgcaaaatgattatgagatgactttgaatgagaattct
gaagtggaggaagtaagcagtgaagcagcatttgttcctgaaacaaaatttaactttgtc
cccattgacatgttgggtccttatgttagcgggaaggagcttgttgatgttgtaggtgtt
gttcaaagtgtgtctccaacaatgagcatcagaagaaagagtaacaacgaaactattcca
aagcgtgatataacaattgctgatgagagtaaaaagacagttgttgtttcattgtggaat
gagcttgcaacaactgtgggccagcaattgttggatattgctgatcaatctcctgtggtt
gctattaagtctctcaaagttggagattttcaaggtttgtctctgtcaacattaagcaga
agcatgctaatggtaaatccagatataccagaagccaagaatttgaaatcatggtttgat
tctgaaggtaaagaggcctcattggcgtctgttggcagtggtatgagcccttcagctagg
aatggagcaagatctatgtacagtgacagagtctcgctgtctcatataactgaaaaccca
tcattaggcgatgacaagcctgtttatttcagcatcagagcatatattagcttcatcaaa
cctgatcagacaatgtggtatcgtgcttgcaaaacctgtaacaagaaagtcacagaagct
attggttctggttactggtgtgaaggatgccagaagaatgatgaagagtgctgcttaaga
tatattttggtgataaaagcttcagatgcaagtggtgaagcttatgtttctgcattcaat
gatgaagcagaaagaatcatcggttgttcagcagacgagcttaatacactgaaacaagag
gtgggagaggacaacatgtttgaacaaaaattaaaacaagctacctgggttcctcatctt
ttccgggtcagtgtttctcaaaacgagtacaacaatgagaagaggcaaaggttaacagtc
agggccatagctccagttgattatgctgctgaatcaaaatttttgttagaggagatatca
aagatgagagcttga
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