Cannabis sativa (hemp): 115710297
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Entry
115710297 CDS
T08987
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csav03009
]
115710297
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115710297
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
90S particles
Helicases
115710297
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
nSTAND3
ATPase
ResIII
AAA_RNF213_3
AAA_19
Sigma54_activat
MRP-63
Motif
Other DBs
NCBI-GeneID:
115710297
NCBI-ProteinID:
XP_030494519
LinkDB
All DBs
Position
3:21342944..21351671
Genome browser
AA seq
1302 aa
AA seq
DB search
MESRRQSRNLSCEQDTLSFGDNDSNALILQSKKKNKRKGMGCEEIKANPAPKLSKSQKKK
MKKLEEEKEKALLLTKSLETLQKYTIPDGAYTLLKSSRNIGQVETFKKKRRMIVEVSKAG
FEVPCSVQPVSRRDDDNVSSECESEMDERHSNQQYNWNEMQPTVVEKGFQNNTNVSLSSP
QHPVDDDEPILSNQPAAADSGKSASLMVDLVPGRSMESTKVSLSNTKPTVVHVSRPDEVE
KKRKDLPIVMMEQEIMEAINDHLTVIICGETGCGKTTQVPQFLYEAGFGSKQYVARGGAI
GVTQPRRVAVLATAKRVAYELGLSLGKQVGFQVRYDKKIGQNCSIKFMTDGILLRELQND
FLLRHYSVIVLDEAHERSLNTDILIGMLSRVIQGREKIYAQQQKLMLSGQTISPENQVFP
LKVVLMSATLRVEDFISGNRLFCVPPPVLDVPTRQFPVTTHFSKRTEIVDYIGQAYKKVL
AIHKNLPQGGILVFVTGQREVEYLCQKLRRASKELIMKASKESVEADPTDTDIKSVGGIS
MEEINDAFDTRGNSTQEQTDVFSLNDGDQCNMDEDELDFSYESETDSDLEFDGENENSLG
EKSSEIDSTLVLGDNGNLDSLKAAFDALSGQTASKAKSNGQKPEFANQESCLEQSNPNKV
STNGARNGFCVGGLCVLPLYAMLPAAAQLRVFEDVKEGERLVVVATNVAETSLTIPGIKY
VVDTGREKVKNYNSSSGMESYEIQWISKASAAQRAGRAGRTAPGHCYRLYSSAVFNNIFH
EFSLAEILKVPVDGVVLLMKSMRIDKVANFPFPTPPEKSALVEAERCLKVLEALDSDGKL
TALGKAMARYPMSPRHSRMLLTVIQIIKKKKSDSRPNLVLAYAVAAAAALSLSNPFVLQF
EESRTNKNDLEQEPSFDASENNKITDNKQEKLRKKKLKEACKLSREKFSNPSSDAMSVAY
ALQCFELAESPTEFCDDYCLHLKTMEEMSKLRKQLLRLVFSHSSDSDLEQDFSWTYGTLE
DVEQSWGQSYNKHPLSLYEEELLGQAICAGWADRVAKRLRLNSKSLEGEERIRANRYQSC
MVKESVFLHRWSTVANSAPEFVVYSELLQTKRPYMHGVTRVKSEWLVEYARSQCTFSTPS
EDTKPYYDPRTDQVLHYLIPSFGPHLWVLSPFSSPITDSNQRLVAFAYALLDGQVLPCLK
NVKNFMAAPPNSILRVEASGQRRVDNLIAKLKKRFIDSYAKLRNVWTENPRELYSEVMDW
FQVSYRKNSDKFEGLWSQMLCEVNLEVQKRFPSKKSKRTKLK
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtagaagacagtctcggaacttgtcatgtgaacaagatacgttgagttttgga
gataatgacagcaatgctttgatcttgcaaagtaagaaaaagaacaaaaggaagggcatg
gggtgtgaagaaatcaaggcaaacccagctcctaaattgagcaaatctcaaaaaaagaag
atgaaaaagttggaggaagagaaggaaaaagcacttttgctaacaaaaagtttggagact
ttacagaaatacacaattcccgatggtgcatatactcttctaaagtcatctagaaacatt
ggtcaggttgaaactttcaagaaaaaacgtagaatgatagttgaagtttccaaagctggc
ttcgaagttccgtgtagtgtgcaaccagtttcgagaagggacgatgacaatgtttctagt
gagtgtgaatctgagatggatgaaagacattcaaatcaacaatataactggaatgagatg
cagccaacagtagtagaaaaaggattccaaaataatacaaatgtttctttgagttcccct
caacatccagttgacgatgatgagcctattttgagcaatcaacctgcagctgcagatagc
ggcaaaagcgcaagcttaatggttgacttagtgccaggcaggtcaatggagagcacaaaa
gtcagtctcagtaatacaaaaccaactgtagtgcatgtatccaggccagatgaggttgag
aaaaagaggaaggatctaccaattgtcatgatggagcaggaaataatggaagctatcaat
gatcatctaactgttattatatgtggagagactgggtgtggtaaaacaacacaagttcct
cagtttctttatgaagctggttttggttcaaaacaatatgttgctcgtggtggtgctatt
ggtgtaacacaaccacgccgtgttgctgttcttgccactgctaagagagtggcatatgaa
cttggtctatctttgggtaaacaagttgggtttcaagtgaggtatgacaagaagattggc
caaaattgctcaatcaagttcatgaccgatgggattttactgcgagaactacagaatgat
tttttgttaaggcattactcagtcatagttctggatgaggctcacgagagaagcttgaat
acagacattctgattggaatgctatcacgtgtcattcaaggccgtgagaaaatatatgca
caacaacaaaaattaatgctgtcggggcaaactataagtcctgaaaatcaggtctttcct
ttaaaagttgtgctgatgagtgctactttgcgagtggaggacttcatttctggtaatagg
ttattttgtgttcctccacctgtgcttgatgttcctacgagacagtttccagtcactaca
cacttctcaaaaagaacagagattgtggattatattggccaagcatacaaaaaagtctta
gctattcacaagaatcttccacaaggaggtatattggtgtttgtcactgggcagagagaa
gtagagtatttgtgccaaaagctacgtagagcttcaaaagaactgattatgaaagcatcc
aaagaaagtgttgaggctgatccaacagacactgatattaaatctgttggtggaataagc
atggaagagattaatgatgcttttgatactcgtggaaattcaacacaggagcaaaccgac
gtgtttagcttaaatgatggtgatcaatgcaatatggatgaggatgagttggatttttca
tatgaatcagaaactgatagtgacttggaatttgatggtgaaaatgaaaattcactggga
gagaaatcatcagaaattgactccacacttgtgttgggagataatgggaaccttgattca
ttgaaagctgcttttgatgctttatcaggacagactgcatcaaaggctaaatctaatggg
caaaaacctgaatttgctaatcaggaatcttgcttagagcaatccaatcctaacaaggtg
agcacaaatggagccagaaatggtttttgtgttggtggtctgtgtgttcttcccctgtat
gccatgttgcctgcagcagcacagttacgtgtatttgaagatgtcaaagaaggcgagagg
cttgttgttgtggcaacaaatgtggctgaaacctctttaactattcctggaataaagtat
gttgttgatacaggaagagagaaagtgaaaaattacaactcttccagcggcatggaatca
tatgaaattcagtggataagtaaggcatcagctgctcaacgtgcaggaagagccggaaga
actgctccaggtcattgttatcgtctatattcttctgcagtgttcaacaatatatttcat
gagttttcgctggccgaaatattaaaagtacctgttgatggtgtcgttcttctcatgaaa
tccatgcgtattgataaggttgccaattttccattcccaactcctcctgagaagtctgcc
ctggttgaagcagagcgttgtttgaaggttcttgaggcacttgatagtgatggtaaactg
acagctttaggaaaggccatggctcgttaccccatgagtcctcgtcactctaggatgctc
cttactgtcattcagataataaagaagaagaaaagcgattctcgtccaaatcttgttcta
gcatatgcagttgcagcagctgcagctttgagcttgtcaaatccttttgtcctacagttt
gaggagagtcgtactaataaaaatgacttagagcaggaaccaagtttcgatgcttcagag
aacaacaaaattacagataataagcaagaaaaattaaggaagaagaaactcaaagaagct
tgtaagttgtctcgggaaaaattctctaatcctagtagtgatgcaatgtctgtagcctat
gcactgcagtgttttgagcttgctgaaagtccaaccgaattctgcgatgactattgctta
catctcaaaactatggaggaaatgtccaagttgagaaaacagttgcttcggcttgtattt
agtcatagcagtgatagtgatcttgagcaagatttctcatggacgtatggaactttagaa
gacgtagaacaatcatggggccagtcctacaataaacaccctctttcactgtatgaggaa
gagctcttgggtcaagctatatgtgctggttgggcagatagagttgctaaacgcttaaga
ttaaattcaaagtcattagaaggcgaagaacgaattcgtgcaaatcggtaccagtcttgc
atggttaaagaatctgtattccttcatcgttggtcgactgtagcaaactcagcccctgaa
tttgtagtttacagtgaactactacaaacgaaacgaccatacatgcacggagtgacgagg
gtgaaatctgaatggcttgtcgagtatgctcgttctcaatgcactttctctacaccctca
gaagataccaaaccttattacgatcctagaactgaccaagtattgcattatctcatacca
agttttgggcctcatttatgggtgctttcaccatttagctcacctattactgatagtaac
caaagacttgtagcctttgcttatgctttgcttgatgggcaggtgttgccatgcttaaaa
aatgtcaaaaatttcatggcagctcctcctaatagcattttgagagttgaggcatcagga
cagagaagagtggataatttaattgccaagttaaagaagaggttcatagatagctatgcc
aagttaagaaatgtatggactgagaatcccagagaattatattcagaagtcatggactgg
tttcaagtcagttatcgtaagaatagtgacaaatttgaagggctatggtcgcaaatgctt
tgtgaggttaatttagaagtacagaaacgtttccccagcaaaaagtctaagagaactaaa
ttaaaatga
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