Cannabis sativa (hemp): 115710634
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Entry
115710634 CDS
T08987
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115710634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115710634
03019 Messenger RNA biogenesis [BR:
csav03019
]
115710634
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115710634
RNA polymerase I system
115710634
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
115710634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW2_Spt5
KOW4_SPT5
KOW
KOW7_SPT5
KOW6_SPT51-2
KOWx_SPT5
Spt5_N
KOW5_SPT5
GPKOW_C
KOW6_SPT5
DUF4438
Motif
Other DBs
NCBI-GeneID:
115710634
NCBI-ProteinID:
XP_030494853
LinkDB
All DBs
Position
X:39527957..39535498
Genome browser
AA seq
1056 aa
AA seq
DB search
MPRRSVEEDEDMDPDEDYGEDYDQLDDGYSDEEGEEDEPVSKGGHRGGGGASTRKRGRSE
FIEDDVDEEEDESEDEFGGGGGGGGSKSSKKRSDKNTGARFFEIEAEVDSDDEEEEDDGE
DDFIVDGTSDLPDEGDGRRMHRRPLLPREDDQEDVEALERRIQERYARSSHTEYDEETTD
VDQQALLPSVRDPKLWMVKCAIGKEREVAACLMQKYIDKGPELQIRSVIALDHLKNYIYI
EADKEAHVKEACKGLRNLYAQKIMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGD
LAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVPKKKAFVPPPRFMNIDEARELHIR
VERRRDAMTGDYFENIGGMLFKDGFLYKTVSMKSISAMNIKPTFDELEKFRKPGENGDGD
IASLSTLFANRKKGHFLKGDAVIVVKGDLKNLKGWVEKVEEDNVHIRPEMKGLPKTLAVN
EKELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIIISDTTKEHIRVFADDVVESSEV
TTGVTKIGDYELHDLVLLDNMTFGVIIRVESEAFQVLKGVTDRPEVSLVKLREIKCKIDR
KNNVQDRFKNTVSVKDVVRIVEGPCRGKQGPVEHIYKGVLFIYDRHHLEHAGFICAKSQS
CVVVGGSRSNGDRNGNTYSRLGQLKPPSHVPQSPMRYSRGGHQNDFGGRGRGGRGGRGHD
GATGTTVKICKGPFKGYRGRVLEFKGPNVRVELESQMKVVTVDRSCISDNLAVTTPHRDT
SRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWE
EGNPGSWATSPQYQPGSPPSRPYEAPTPGSGWANTPGGNYSEAGTPRDSSSSYANAPSPY
MPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGGDAEGPWCVPDILVTVRR
SGDEAIVGAIRDVLSDGSCRVVLGSGGGGESMVAVPSELEAVVPRKNDRIKIMGGALRGA
TGKLIGVDGTDGIVKVDDTLDVKILDLAMLAKLAHS
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtcggagcgtcgaggaagatgaagacatggaccctgacgaggattatggtgag
gactacgaccaacttgatgatggatattctgacgaggagggagaggaagatgaacctgtc
agcaaaggtggccaccgtggagggggcggcgcttcgactcggaagcgagggagatccgaa
tttattgaggatgacgttgacgaggaagaagacgagtccgaagatgaatttggcggtggc
ggcggcggcggtggaagtaaaagtagcaagaaacgcagtgacaagaacactggtgctcga
ttttttgaaatcgaagctgaagttgacagtgatgatgaggaggaagaagatgacggcgag
gacgattttatagtcgatgggacatctgacttacccgacgaaggtgatggaagaaggatg
caccgccgtccattgcttccacgtgaggatgatcaagaagatgttgaagctcttgagaga
agaattcaagaaagatatgcaaggtctagccacacagaatatgatgaggaaaccactgat
gtagaccaacaagctttgttgccatctgttagggatccgaagttgtggatggtgaaatgt
gcgattggtaaagagcgagaagttgctgcttgcttaatgcaaaagtacattgataaggga
cctgaactgcaaatcagatctgtaattgcacttgatcatctgaagaactacatttatatt
gaagcggacaaggaagcacatgtgaaggaggcttgcaaaggtctccgcaacttatatgcc
cagaaaataatgcttgttccaattagagaaatgacggatgttctttcagttgagagcaaa
gcaatagatctttctagggatacatgggtcaggatgaagattggtacatacaaaggggat
cttgcaaaagtagttgatgtggataatgtacgacagagagttacagtgaaactaattcca
aggatagacctgcaggctcttgcaaataaattggagggtagagaagttccaaaaaagaag
gcatttgttcctcctccacgttttatgaatattgatgaggcgagagagcttcatattagg
gtggaacgtcggcgagatgcaatgactggtgattactttgagaatattggtggcatgctg
tttaaagatggtttcttatataaaacagtctcgatgaaatccattagtgcaatgaatata
aaacctacctttgatgagcttgagaaattccggaaacctggcgagaatggtgatggagat
atagctagtctgtctactttatttgcaaacagaaaaaaggggcactttttgaagggcgat
gcagttattgttgtcaagggagatcttaaaaatttgaaaggatgggttgagaaagttgag
gaagataacgttcatatcagaccagaaatgaaaggccttccaaaaacgttggctgtaaat
gagaaagagctctgcaagtactttgaacctggcaatcatgtcaaagttgtgtctggtacc
caggaaggtgcaactggtatggttgttaaggttgagcagcatgtgctcattattatatct
gatacaacaaaggagcatattcgtgtgtttgctgatgatgttgtggagagctcagaagtc
acaacaggtgttaccaaaattggggactacgaacttcatgatcttgtgttattggataat
atgactttcggtgtaattatacgtgtggaaagtgaagcatttcaggtgctcaagggagtt
actgacaggcctgaagtttcccttgtcaaattaagagagataaagtgcaagatcgatagg
aaaaataatgtccaagatcggtttaagaatacagtatctgtgaaagatgttgttaggatt
gtcgagggaccttgcagaggaaaacaaggtccagttgaacacatatacaagggtgttcta
tttatctatgaccgccaccaccttgagcatgctggttttatttgtgccaagtctcagtct
tgtgttgttgtgggaggatcacgttcaaatggtgatagaaatggtaatacctattcaaga
ctaggccaactcaaacctccatctcatgttcctcagtctccaatgagatattctaggggt
ggtcatcaaaatgattttggtggtagaggaagaggtggaagaggtggaagagggcatgat
ggtgcaactggcaccacagtaaaaatttgcaagggtccatttaagggctatcgtgggcgt
gttttagaatttaagggaccaaatgttcgtgttgaattggaatctcagatgaaggttgtt
acagttgatcggagttgtatatctgataacttggctgttacaaccccccatcgcgatacg
tctagatatggcatgggaagtgagacacccatgcatccttctcgaactcctctacaccca
tatatgacacccatgagagatgctggagcaactccaattcatgatggcatgagaaccccc
atgcgagatcgagcttggaatccttatactccgatgagtccacccagggataactgggag
gaaggaaaccctggttcttgggctaccagcccacagtatcagccgggcagcccgccttca
cgtccatatgaagcaccaactcctggttcaggttgggctaacacccctggtggtaactac
agtgaagctggaacaccaagggatagtagttcttcttatgccaatgctccaagcccttat
atgccatccactccgggtgggcagcctatgactccaaattcagcatcctatcttccggga
actcctggagggcagccgatgacaccgggcactggtggtttagatgctatgtctcctgtc
atagggggagatgcagaaggtccatggtgtgtaccggacatattggtaactgtacgcaga
tctggagatgaagctattgtcggagcaatccgtgacgtactctcagatggatcttgtagg
gtagttcttggttcgggtggcggtggtgaatccatggtggccgttcctagtgaattggag
gctgtggtgccgaggaagaatgacagaatcaagatcatgggtggtgcattacgcggagcc
accggcaagctaataggagtggacggcactgatggaattgtaaaagtagatgacactctt
gatgttaagatcttagatttagctatgcttgcaaaactagctcactcgtga
DBGET
integrated database retrieval system
