Cannabis sativa (hemp): 115710711
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Entry
115710711 CDS
T08987
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115710711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115710711
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115710711
Spliceosome [BR:
csav03041
]
Complex A
U2 snRNP components
U2 related factors
115710711
Complex B
115710711
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
115710711
NCBI-ProteinID:
XP_030494924
LinkDB
All DBs
Position
3:complement(1798919..1802444)
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AA seq
838 aa
AA seq
DB search
MEALKRNGKRKELKKERERRRNDGDFKEREDESSSGRCRESSRSRKRRSTGEDEERKLGE
EVEKRRKRVQQWQEFRRKNEEVGREKIWEVNDRKIWSLEDEQSDGEIDQVSDDEVRDGMK
IGLQNGVDGVSVDEEIDPLDAYINTMVLPEVEKLNDEKSIELKNKSLGRIIPGEESDSDY
GDLEDDGELIDDEEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTS
KEVSAYREELELTTHGEDVPKPVKTWYQMGLTSKILETIKKLKYEKPMPIQVQALPTIMS
GRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVSGEGPIGLIMAPTRELVKQIHGDIKMF
SKVLGIRCVPVYGGSDVGQQISELKKGAEIVVCTPGRMIDMLCTSSGKITNLRRVTYLVM
DEADRMFDMGFEPQISLIIRNIRPDRQNVLFSATFPRQVEKLARSLLHKPVEIQVGGRSA
VNKDITQLVEVRPENERFLRLLEILGEWYEKGKILVFVHSQEKCDALFRDLLKHSYPCLS
LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPIYYEDYVHRVG
RTGRAGRKGCAITFISEEDSRYAPHIVKALELSDQVVPDDLKALADSFLQKVNQGLEQPQ
SGYVRNDGYKFSKEEDELMIAAKKAQAKACGFEVMSDSEDEGVCKEELDIDGSASSSKGR
TEALVPETKLPVSVNLQHILEKIQADAGPKHYRAELEINDFPQNARWKVTHKLTLGTITE
WTGAAITTRGKHFPPGQVAGPGDRKLYLFIEGPTEQSVKRAKAEIKRVLEDITSQALM
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggaagctttgaagcgtaatggtaagagaaaagaattaaagaaagaaagagagaggaga
aggaatgatggtgattttaaggagagagaggatgaatcaagctctggtaggtgcagagag
agttctagatctagaaagaggagaagtactggtgaggatgaagagcgaaaattaggggaa
gaggttgagaagcggaggaagagagttcagcagtggcaagaattcaggagaaagaatgaa
gaagttggaagagagaaaatttgggaggtgaatgataggaagatttggagccttgaagat
gaacaatctgatggagaaatcgatcaagttagtgatgatgaagttagggatggaatgaaa
attggtttgcagaatggggttgatggggtttctgttgatgaggagattgatccattagat
gcttatataaatactatggttttgcctgaagttgaaaaactaaatgatgagaaaagtata
gagttgaagaataaatctttgggtagaataattcctggggaggagtctgattcggattat
ggggatcttgaggatgatggagaattgatagatgatgaagaagatgatgatgagttcatg
aaaagagttaagaagacaaaagctgaaaaactctctattgttgatcattcgaaaattgat
tataagccatttaggaagaatttctatattgaagtgaaagaaatatcaagaatgacttcg
aaagaggtttctgcataccgtgaagaattggaattgactacacatggtgaggatgtaccg
aagccagttaagacttggtaccaaatgggacttacaagtaaaatattggagacaataaag
aaacttaaatatgaaaagccaatgccaattcaagttcaggcactgcctacaattatgagt
ggtcgagattgcattggcattgcaaaaactggctcgggcaaaactctggcatttgtgcta
ccaatgttgaggcatattaaggaccagccgcctgtcgtttcaggagaggggcctatcggg
cttataatggcacctacaagggagcttgttaaacagattcatggtgatataaaaatgttc
tccaaggtattaggtattaggtgtgtgcctgtatatggaggctctgatgttggccaacaa
attagtgaattaaaaaagggtgctgaaattgttgtttgtacaccaggcagaatgattgac
atgctttgcacaagcagtggaaaaattacaaatctccgtagagttacatatttggtcatg
gatgaagctgacaggatgtttgacatgggttttgaacctcaaatcagtttgattattcgg
aatattcgtccagatagacaaaatgtacttttctcagctactttccctcgtcaagttgaa
aagttagctcgcagtttgttacacaaacctgtggaaatacaggtaggtggaaggagtgct
gttaataaggacatcacgcagctggttgaagtgaggcctgaaaatgagaggtttcttaga
ttattagaaatacttggagaatggtatgagaaagggaaaattctagtttttgtccattcc
caagaaaagtgtgatgctttgttcagggatttactcaaacatagttatccttgcctatct
cttcatggtgctaaggaccaaacggatcgtgagtcgaccatttccgatttcaaaagtaat
gtttgcaatttgttgattgcaactagtgttgctgctagaggattagatgtcaaggagctt
gaactggtgattaactttgatgtgccaatttactatgaggactacgttcaccgtgttggt
cgaacaggtcgagctggccgtaaaggttgtgctataacatttatatctgaggaagattct
agatatgctcctcatatagtaaaagcacttgagctttcggatcaagttgttccagatgac
ttaaaagcactagctgatagtttcttgcaaaaagtgaatcaaggattggaacaaccacaa
agtggctatgtgagaaatgatggttacaagtttagtaaagaagaagatgagttgatgata
gcagcaaaaaaagcacaggcgaaagcgtgtggtttcgaagttatgtccgactcagaagat
gaaggtgtctgcaaggaagaacttgacatagatggctccgcttcttcctccaaaggcaga
acagaagcattggtgcccgaaactaaactgcctgtatcggtaaacttgcagcatatccta
gagaaaattcaagctgatgcagggcctaaacactacagagcagagctggagataaacgat
ttccctcaaaacgctcgctggaaagtcacgcataagttaactttgggaactataaccgag
tggaccggagctgccattactactagggggaagcacttcccgccgggtcaagttgcagga
ccaggagaccgcaaactttacttgtttattgaaggacctaccgaacaatctgtgaagaga
gctaaagccgaaatcaaacgtgttttggaagacataacaagccaggctctcatgtag
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