Cannabis sativa (hemp): 115710748
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Entry
115710748 CDS
T08987
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav00040
Pentose and glucuronate interconversions
csav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
115710748
Enzymes [BR:
csav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
115710748
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF1894
Motif
Other DBs
NCBI-GeneID:
115710748
NCBI-ProteinID:
XP_030494962
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Position
3:17930061..17936959
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AA seq
497 aa
AA seq
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MVRRTCIVVIISLILSSFSYLGVAYLNLTLPGQHPFPEQVVHDVHRKVNASIARREMLQT
SLRDQSSSTYSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAVGGKGGKYYIVTD
SSDDDAVNPKPGTLRYAVIQTEPLWIVFPQNMLIKLSQELIFNSYKTLDGRGANVHIVGG
GCITLQYISNVIIHNIHIHHCHVSGNANVRSSPSHYGYRTESDGDGISIFGAKDIWIDHC
SLSHCKDGLIDAVMGSTGITISNNLFSHHNEVMLLGHSDDYTPDSGMQVTIAFNHFGENL
VQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYTAPIDRNAKEVTKRVETG
EGEWRSWNWRSEGDIMVNGAYFVASGEGVEVKYEKAYSVEPKSAVLIDMLTLHAGPLGVG
SRDNNVGMWSTGPNGGTSGLGSGPDYTDEMSGNGNRSVPISTSSAFILFFSLLLSLSTLL
FWYAASDTHYFTIKYNL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggttcgaagaacctgcattgttgtaataatctctcttattctgagctcattctcatac
cttggtgttgcatatcttaacctcactcttcccggccagcatccatttcctgaacaggtt
gttcatgatgttcacaggaaagtaaatgcatccatagcaagaagggaaatgctacaaaca
tccttaagagaccaatcctcatcaacatattcttcatgcctaaccggtaatcctatagat
gattgttggaaatgcgacccggactggcccaacaaccggcagcgccttgccgattgcgca
atcgggttcggacagtatgccgtcggaggtaaaggtggcaagtactacattgtcaccgat
agctctgacgacgatgctgtcaacccgaagcccgggacgcttcggtatgccgtgattcag
acggagccattgtggattgtgttcccacagaacatgcttataaagctgtcccaagagctc
atctttaatagttacaaaactttggatgggagaggagctaacgtacacattgttggtggt
ggttgcattactctgcagtatataagcaatgtcattatacacaatattcatattcatcat
tgtcatgtttcagggaatgcgaatgtgcggtcgagcccatcacactacggatacagaaca
gaatcagacggtgatggaatctccatatttggggcaaaggacatatggatcgaccactgc
tcactctcacactgtaaggatgggttaatagacgcagtgatgggttcaacaggaatcacc
atatcaaacaacctcttctcccaccacaacgaggtcatgctgctcggccacagcgatgat
tacactcccgactcaggcatgcaagtcaccattgccttcaaccacttcggcgagaacctc
gttcagcgcatgcctcgctgtcgacgtggctacatccacgtcgttaataatgatttcact
cgttgggagatgtacgccatcggcggtagcggaaaccccaccattaatagccagggcaac
cgctacactgcgcctattgaccgcaatgccaaggaggtaacaaagagagtagagactggc
gaaggagaatggaggagctggaattggagatcagaaggagatataatggtgaatggtgca
tactttgtggcctcaggtgaaggcgttgaggttaagtatgagaaggcttatagtgtggag
cctaaatcagctgtgcttatcgatatgctcacattacatgctggtccacttggagttggt
agcagggacaacaatgtgggaatgtggagcacaggaccaaatggtggaacaagtggtttg
ggatcagggcctgactatacagatgagatgtctggaaatggaaatagaagtgtccctata
tcaacttcatctgcctttattctcttcttctcattgttattatcactctcaaccttgtta
ttttggtatgctgcttctgacacccattactttactatcaaatacaacttatga
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