Cannabis sativa (hemp): 115711124
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Entry
115711124 CDS
T08987
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115711124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115711124
Spliceosome [BR:
csav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115711124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_DCAF4
PRP4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SPT8
WD40_like
DUF6929
Nbas_N
Endonuc-MspI
Motif
Other DBs
NCBI-GeneID:
115711124
NCBI-ProteinID:
XP_030495321
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Position
3:complement(4838097..4842215)
Genome browser
AA seq
587 aa
AA seq
DB search
MAAEEENNPLPTPMESSSPILDDQSLISAANTIPFQPVLPIIPPGIPPPIVPPVVLPMVP
AMAPIPTVPAPSILRPLAPLPARPPVIRPPVPQNGEVVTSDSDSDDESGPSRSAPGSTLE
YEISEESRQIRERHEKAMQELMMKRRASALAVPTNDASVRARLRRLGEPITLFGEREMER
RDRLRMIMAKLDAEGQLEKLMKAHEEEEAAASAATEDTEEEMLQYPFYTEGSKALLDARI
DIAKYSIVRAASRLQRARRRREDPDEDVDAEMDWVLNQARTLALDCSEIGDDRPLSGCSF
SQDGKLLATCALSGVAKLWSMPQVKKVATLKGHTERLTDVTFSPTDNILATASADRTAKL
WNTDGTLLKTFKGHLDRLARINFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSV
YGLAFNQDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLALSFSGNGYYLASGGED
NTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDTTAKIWSARDFKPVKTL
SGHEAKVTSLDVSGDGNCIATVSHDRTIKLWSSSGTEEENRHEMELD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagaagaggaaaataaccctttaccaactccaatggaatcatcttctccaatt
cttgatgatcagtctctaatatctgctgcaaataccattccatttcagccagtcctccct
attattccaccaggaatcccacccccaattgtgcctccagttgttcttcccatggttcct
gcaatggctccaattcctacggttccagctccctccattcttcgcccattagcaccttta
ccagcccgccctcctgttattaggcccccagtaccacaaaatggtgaggttgtaacgagt
gactcagattcagatgatgaatcaggcccttcccgctctgctcctggttcaactctggag
tatgagatatcggaggagagtagacaaataagagaacgacacgaaaaagcaatgcaagaa
ctgatgatgaagcggcgtgcttctgcccttgcagttcctaccaatgatgcatctgttcgt
gcacgtctacgtcggcttggcgagcccattacactttttggagaaagagaaatggaaaga
cgggataggctgagaatgataatggcaaagttagatgctgaagggcagctggagaagctg
atgaaagctcacgaggaagaggaggctgcagcttcagctgcaacggaagatactgaagaa
gaaatgcttcagtaccctttttacactgaaggatccaaagcacttttggatgctagaatt
gatattgcaaagtattcaatagtaagagcagcctcacgtcttcaacgtgcacggaggaga
agagaagatcctgatgaggacgtggatgcagagatggattgggttttaaatcaggcaagg
accttagcccttgattgcagtgagattggggatgaccgtccactttctggttgctccttc
tcacaagatggaaaactacttgccacctgtgctttaagtggagttgctaagctgtggagc
atgcctcaagtgaaaaaggttgccaccttaaagggacacacagagcgactaaccgatgtc
acattttctccaacggacaatattctagcaactgcttctgctgaccggactgcaaagctg
tggaacactgacggaactctcttgaaaacattcaagggccatctagaccgtcttgcacgt
atcaatttccatccatctggaaagtacttgggcacaactagctttgataagacgtggaga
ttgtgggatgtcgatactggtgtggaattgcttcttcaagaaggccatagcagaagtgtc
tacggactagcctttaatcaagatggatcattagctgcttcttgtggtctggattccctt
gcacgtgtttgggatctcagaactggccgaagtattcttgccttggaaggccatgttaag
ccagttcttgccttaagtttctcaggaaatggctattatttagcatcagggggagaagat
aacacatgtcgcatatgggatttaagaaagaaaaaatcattgtacaccattccagcccac
tcgaacctcatttctcaggtcaaattcgagcctcaagaaggatactttctggtaacggcc
tcatatgatacgacagccaagatttggtcagcacgagattttaagcctgtgaaaacactt
tctggacacgaagctaaggttacttcgttagatgtatcaggagatggaaattgcattgct
accgtgtcacatgaccgaacaatcaagctttggtcgagcagtggtaccgaagaggaaaat
cgccatgaaatggagcttgactag
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integrated database retrieval system
